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Germline mutation analyses of malignant ground glass opacity nodules in non-smoking lung adenocarcinoma patients

BACKGROUND: Germline mutations play an important role in the pathogenesis of lung cancer. Nonetheless, research on malignant ground glass opacity (GGO) nodules is limited. METHODS: A total of 13 participants with malignant GGO nodules were recruited in this study. Peripheral blood was used for exome...

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Autores principales: Mao, Wenjun, Chen, Ruo, Lu, Rongguo, Wang, Shengfei, Song, Huizhu, You, Dan, Liu, Feng, He, Yijun, Zheng, Mingfeng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8415279/
https://www.ncbi.nlm.nih.gov/pubmed/34540367
http://dx.doi.org/10.7717/peerj.12048
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author Mao, Wenjun
Chen, Ruo
Lu, Rongguo
Wang, Shengfei
Song, Huizhu
You, Dan
Liu, Feng
He, Yijun
Zheng, Mingfeng
author_facet Mao, Wenjun
Chen, Ruo
Lu, Rongguo
Wang, Shengfei
Song, Huizhu
You, Dan
Liu, Feng
He, Yijun
Zheng, Mingfeng
author_sort Mao, Wenjun
collection PubMed
description BACKGROUND: Germline mutations play an important role in the pathogenesis of lung cancer. Nonetheless, research on malignant ground glass opacity (GGO) nodules is limited. METHODS: A total of 13 participants with malignant GGO nodules were recruited in this study. Peripheral blood was used for exome sequencing, and germline mutations were analyzed using InterVar. The whole exome sequencing dataset was analyzed using a filtering strategy. KOBAS 3.0 was used to analyze KEGG pathway to further identify possible deleterious mutations. RESULTS: There were seven potentially deleterious germline mutations. NM_001184790:exon8: c.C1070T in PARD3, NM_001170721:exon4:c.C392T in BCAR1 and NM_001127221:exon46: c.G6587A in CACNA1A were present in three cases each; rs756875895 frameshift in MAX, NM_005732: exon13:c.2165_2166insT in RAD50 and NM_001142316:exon2:c.G203C in LMO2, were present in two cases each; one variant was present in NOTCH3. CONCLUSIONS: Our results expand the germline mutation spectrum in malignant GGO nodules. Importantly, these findings will potentially help screen the high-risk population, guide their health management, and contribute to their clinical treatment and determination of prognosis.
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spelling pubmed-84152792021-09-17 Germline mutation analyses of malignant ground glass opacity nodules in non-smoking lung adenocarcinoma patients Mao, Wenjun Chen, Ruo Lu, Rongguo Wang, Shengfei Song, Huizhu You, Dan Liu, Feng He, Yijun Zheng, Mingfeng PeerJ Genetics BACKGROUND: Germline mutations play an important role in the pathogenesis of lung cancer. Nonetheless, research on malignant ground glass opacity (GGO) nodules is limited. METHODS: A total of 13 participants with malignant GGO nodules were recruited in this study. Peripheral blood was used for exome sequencing, and germline mutations were analyzed using InterVar. The whole exome sequencing dataset was analyzed using a filtering strategy. KOBAS 3.0 was used to analyze KEGG pathway to further identify possible deleterious mutations. RESULTS: There were seven potentially deleterious germline mutations. NM_001184790:exon8: c.C1070T in PARD3, NM_001170721:exon4:c.C392T in BCAR1 and NM_001127221:exon46: c.G6587A in CACNA1A were present in three cases each; rs756875895 frameshift in MAX, NM_005732: exon13:c.2165_2166insT in RAD50 and NM_001142316:exon2:c.G203C in LMO2, were present in two cases each; one variant was present in NOTCH3. CONCLUSIONS: Our results expand the germline mutation spectrum in malignant GGO nodules. Importantly, these findings will potentially help screen the high-risk population, guide their health management, and contribute to their clinical treatment and determination of prognosis. PeerJ Inc. 2021-08-31 /pmc/articles/PMC8415279/ /pubmed/34540367 http://dx.doi.org/10.7717/peerj.12048 Text en ©2021 Mao et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Genetics
Mao, Wenjun
Chen, Ruo
Lu, Rongguo
Wang, Shengfei
Song, Huizhu
You, Dan
Liu, Feng
He, Yijun
Zheng, Mingfeng
Germline mutation analyses of malignant ground glass opacity nodules in non-smoking lung adenocarcinoma patients
title Germline mutation analyses of malignant ground glass opacity nodules in non-smoking lung adenocarcinoma patients
title_full Germline mutation analyses of malignant ground glass opacity nodules in non-smoking lung adenocarcinoma patients
title_fullStr Germline mutation analyses of malignant ground glass opacity nodules in non-smoking lung adenocarcinoma patients
title_full_unstemmed Germline mutation analyses of malignant ground glass opacity nodules in non-smoking lung adenocarcinoma patients
title_short Germline mutation analyses of malignant ground glass opacity nodules in non-smoking lung adenocarcinoma patients
title_sort germline mutation analyses of malignant ground glass opacity nodules in non-smoking lung adenocarcinoma patients
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8415279/
https://www.ncbi.nlm.nih.gov/pubmed/34540367
http://dx.doi.org/10.7717/peerj.12048
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