Cargando…

Single-particle cryo-EM: alternative schemes to improve dose efficiency

Imaging of biomolecules by ionizing radiation, such as electrons, causes radiation damage which introduces structural and compositional changes of the specimen. The total number of high-energy electrons per surface area that can be used for imaging in cryogenic electron microscopy (cryo-EM) is sever...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhang, Yue, Lu, Peng-Han, Rotunno, Enzo, Troiani, Filippo, van Schayck, J. Paul, Tavabi, Amir H., Dunin-Borkowski, Rafal E., Grillo, Vincenzo, Peters, Peter J., Ravelli, Raimond B. G.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8415325/
https://www.ncbi.nlm.nih.gov/pubmed/34475283
http://dx.doi.org/10.1107/S1600577521007931
_version_ 1783747945687941120
author Zhang, Yue
Lu, Peng-Han
Rotunno, Enzo
Troiani, Filippo
van Schayck, J. Paul
Tavabi, Amir H.
Dunin-Borkowski, Rafal E.
Grillo, Vincenzo
Peters, Peter J.
Ravelli, Raimond B. G.
author_facet Zhang, Yue
Lu, Peng-Han
Rotunno, Enzo
Troiani, Filippo
van Schayck, J. Paul
Tavabi, Amir H.
Dunin-Borkowski, Rafal E.
Grillo, Vincenzo
Peters, Peter J.
Ravelli, Raimond B. G.
author_sort Zhang, Yue
collection PubMed
description Imaging of biomolecules by ionizing radiation, such as electrons, causes radiation damage which introduces structural and compositional changes of the specimen. The total number of high-energy electrons per surface area that can be used for imaging in cryogenic electron microscopy (cryo-EM) is severely restricted due to radiation damage, resulting in low signal-to-noise ratios (SNR). High resolution details are dampened by the transfer function of the microscope and detector, and are the first to be lost as radiation damage alters the individual molecules which are presumed to be identical during averaging. As a consequence, radiation damage puts a limit on the particle size and sample heterogeneity with which electron microscopy (EM) can deal. Since a transmission EM (TEM) image is formed from the scattering process of the electron by the specimen interaction potential, radiation damage is inevitable. However, we can aim to maximize the information transfer for a given dose and increase the SNR by finding alternatives to the conventional phase-contrast cryo-EM techniques. Here some alternative transmission electron microscopy techniques are reviewed, including phase plate, multi-pass transmission electron microscopy, off-axis holography, ptychography and a quantum sorter. Their prospects for providing more or complementary structural information within the limited lifetime of the sample are discussed.
format Online
Article
Text
id pubmed-8415325
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher International Union of Crystallography
record_format MEDLINE/PubMed
spelling pubmed-84153252021-09-16 Single-particle cryo-EM: alternative schemes to improve dose efficiency Zhang, Yue Lu, Peng-Han Rotunno, Enzo Troiani, Filippo van Schayck, J. Paul Tavabi, Amir H. Dunin-Borkowski, Rafal E. Grillo, Vincenzo Peters, Peter J. Ravelli, Raimond B. G. J Synchrotron Radiat Radiation Damage Imaging of biomolecules by ionizing radiation, such as electrons, causes radiation damage which introduces structural and compositional changes of the specimen. The total number of high-energy electrons per surface area that can be used for imaging in cryogenic electron microscopy (cryo-EM) is severely restricted due to radiation damage, resulting in low signal-to-noise ratios (SNR). High resolution details are dampened by the transfer function of the microscope and detector, and are the first to be lost as radiation damage alters the individual molecules which are presumed to be identical during averaging. As a consequence, radiation damage puts a limit on the particle size and sample heterogeneity with which electron microscopy (EM) can deal. Since a transmission EM (TEM) image is formed from the scattering process of the electron by the specimen interaction potential, radiation damage is inevitable. However, we can aim to maximize the information transfer for a given dose and increase the SNR by finding alternatives to the conventional phase-contrast cryo-EM techniques. Here some alternative transmission electron microscopy techniques are reviewed, including phase plate, multi-pass transmission electron microscopy, off-axis holography, ptychography and a quantum sorter. Their prospects for providing more or complementary structural information within the limited lifetime of the sample are discussed. International Union of Crystallography 2021-08-26 /pmc/articles/PMC8415325/ /pubmed/34475283 http://dx.doi.org/10.1107/S1600577521007931 Text en © Yue Zhang et al. 2021 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Radiation Damage
Zhang, Yue
Lu, Peng-Han
Rotunno, Enzo
Troiani, Filippo
van Schayck, J. Paul
Tavabi, Amir H.
Dunin-Borkowski, Rafal E.
Grillo, Vincenzo
Peters, Peter J.
Ravelli, Raimond B. G.
Single-particle cryo-EM: alternative schemes to improve dose efficiency
title Single-particle cryo-EM: alternative schemes to improve dose efficiency
title_full Single-particle cryo-EM: alternative schemes to improve dose efficiency
title_fullStr Single-particle cryo-EM: alternative schemes to improve dose efficiency
title_full_unstemmed Single-particle cryo-EM: alternative schemes to improve dose efficiency
title_short Single-particle cryo-EM: alternative schemes to improve dose efficiency
title_sort single-particle cryo-em: alternative schemes to improve dose efficiency
topic Radiation Damage
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8415325/
https://www.ncbi.nlm.nih.gov/pubmed/34475283
http://dx.doi.org/10.1107/S1600577521007931
work_keys_str_mv AT zhangyue singleparticlecryoemalternativeschemestoimprovedoseefficiency
AT lupenghan singleparticlecryoemalternativeschemestoimprovedoseefficiency
AT rotunnoenzo singleparticlecryoemalternativeschemestoimprovedoseefficiency
AT troianifilippo singleparticlecryoemalternativeschemestoimprovedoseefficiency
AT vanschayckjpaul singleparticlecryoemalternativeschemestoimprovedoseefficiency
AT tavabiamirh singleparticlecryoemalternativeschemestoimprovedoseefficiency
AT duninborkowskirafale singleparticlecryoemalternativeschemestoimprovedoseefficiency
AT grillovincenzo singleparticlecryoemalternativeschemestoimprovedoseefficiency
AT peterspeterj singleparticlecryoemalternativeschemestoimprovedoseefficiency
AT ravelliraimondbg singleparticlecryoemalternativeschemestoimprovedoseefficiency