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Immune-Related lncRNAs to Construct Novel Signatures and Predict the Prognosis of Rectal Cancer

Colorectal cancer (CRC) is one of the most common cancers. Almost 1/3 of CRC are rectal cancer, and 95% of rectal cancers are rectal adenocarcinoma (READ). Increasing evidences indicated that long noncoding RNAs (lncRNAs) have important role in the genesis and development of cancers. The purpose of...

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Autores principales: Xing, Xiao-Liang, Xing, Chaoqun, Huang, Zhi, Yao, Zhi-Yong, Liu, Yuan-Wu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8415501/
https://www.ncbi.nlm.nih.gov/pubmed/34485113
http://dx.doi.org/10.3389/fonc.2021.661846
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author Xing, Xiao-Liang
Xing, Chaoqun
Huang, Zhi
Yao, Zhi-Yong
Liu, Yuan-Wu
author_facet Xing, Xiao-Liang
Xing, Chaoqun
Huang, Zhi
Yao, Zhi-Yong
Liu, Yuan-Wu
author_sort Xing, Xiao-Liang
collection PubMed
description Colorectal cancer (CRC) is one of the most common cancers. Almost 1/3 of CRC are rectal cancer, and 95% of rectal cancers are rectal adenocarcinoma (READ). Increasing evidences indicated that long noncoding RNAs (lncRNAs) have important role in the genesis and development of cancers. The purpose of our present study was to identify the differential expression lncRNAs which potentially related with immune cells infiltration and establish a risk assessment model to predict the clinical outcome for READ patients. We obtained three immune-related differential expression lncRNAs (IR-DELs) (C17orf77, GATA2-AS1, and TPT1-AS1) by differential expression analysis following correlation analysis and Cox regression analysis. A risk assessment model were constructed by integrating these analysis results. We then plotted the 1-, 3-, and 5-year ROC curves depending on our risk assessment model, which suggested that all AUC values were over 0.7. In addition, we found that the risk assessment model was correlated with several immune cells and factors. This study suggested that those three signatures (C17orf77, GATA2-AS1, and TPT1-AS1) screened by pairing IR-DELs could be prognosis markers for READ patients and might benefit them from antitumor immunotherapy.
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spelling pubmed-84155012021-09-04 Immune-Related lncRNAs to Construct Novel Signatures and Predict the Prognosis of Rectal Cancer Xing, Xiao-Liang Xing, Chaoqun Huang, Zhi Yao, Zhi-Yong Liu, Yuan-Wu Front Oncol Oncology Colorectal cancer (CRC) is one of the most common cancers. Almost 1/3 of CRC are rectal cancer, and 95% of rectal cancers are rectal adenocarcinoma (READ). Increasing evidences indicated that long noncoding RNAs (lncRNAs) have important role in the genesis and development of cancers. The purpose of our present study was to identify the differential expression lncRNAs which potentially related with immune cells infiltration and establish a risk assessment model to predict the clinical outcome for READ patients. We obtained three immune-related differential expression lncRNAs (IR-DELs) (C17orf77, GATA2-AS1, and TPT1-AS1) by differential expression analysis following correlation analysis and Cox regression analysis. A risk assessment model were constructed by integrating these analysis results. We then plotted the 1-, 3-, and 5-year ROC curves depending on our risk assessment model, which suggested that all AUC values were over 0.7. In addition, we found that the risk assessment model was correlated with several immune cells and factors. This study suggested that those three signatures (C17orf77, GATA2-AS1, and TPT1-AS1) screened by pairing IR-DELs could be prognosis markers for READ patients and might benefit them from antitumor immunotherapy. Frontiers Media S.A. 2021-08-16 /pmc/articles/PMC8415501/ /pubmed/34485113 http://dx.doi.org/10.3389/fonc.2021.661846 Text en Copyright © 2021 Xing, Xing, Huang, Yao and Liu https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Xing, Xiao-Liang
Xing, Chaoqun
Huang, Zhi
Yao, Zhi-Yong
Liu, Yuan-Wu
Immune-Related lncRNAs to Construct Novel Signatures and Predict the Prognosis of Rectal Cancer
title Immune-Related lncRNAs to Construct Novel Signatures and Predict the Prognosis of Rectal Cancer
title_full Immune-Related lncRNAs to Construct Novel Signatures and Predict the Prognosis of Rectal Cancer
title_fullStr Immune-Related lncRNAs to Construct Novel Signatures and Predict the Prognosis of Rectal Cancer
title_full_unstemmed Immune-Related lncRNAs to Construct Novel Signatures and Predict the Prognosis of Rectal Cancer
title_short Immune-Related lncRNAs to Construct Novel Signatures and Predict the Prognosis of Rectal Cancer
title_sort immune-related lncrnas to construct novel signatures and predict the prognosis of rectal cancer
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8415501/
https://www.ncbi.nlm.nih.gov/pubmed/34485113
http://dx.doi.org/10.3389/fonc.2021.661846
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