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Classification of soybean frogeye leaf spot disease using leaf hyperspectral reflectance

In this study, the feasibility of classifying soybean frogeye leaf spot (FLS) is investigated. Leaf images and hyperspectral reflectance data of healthy and FLS diseased soybean leaves were acquired. First, image processing was used to classify FLS to create a reference for subsequent analysis of hy...

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Detalles Bibliográficos
Autores principales: Liu, Shuang, Yu, Haiye, Sui, Yuanyuan, Zhou, Haigen, Zhang, Junhe, Kong, Lijuan, Dang, Jingmin, Zhang, Lei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8415606/
https://www.ncbi.nlm.nih.gov/pubmed/34478465
http://dx.doi.org/10.1371/journal.pone.0257008
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author Liu, Shuang
Yu, Haiye
Sui, Yuanyuan
Zhou, Haigen
Zhang, Junhe
Kong, Lijuan
Dang, Jingmin
Zhang, Lei
author_facet Liu, Shuang
Yu, Haiye
Sui, Yuanyuan
Zhou, Haigen
Zhang, Junhe
Kong, Lijuan
Dang, Jingmin
Zhang, Lei
author_sort Liu, Shuang
collection PubMed
description In this study, the feasibility of classifying soybean frogeye leaf spot (FLS) is investigated. Leaf images and hyperspectral reflectance data of healthy and FLS diseased soybean leaves were acquired. First, image processing was used to classify FLS to create a reference for subsequent analysis of hyperspectral data. Then, dimensionality reduction methods of hyperspectral data were used to obtain the relevant information pertaining to FLS. Three single methods, namely spectral index (SI), principal component analysis (PCA), and competitive adaptive reweighted sampling (CARS), along with a PCA and SI combined method, were included. PCA was used to select the effective principal components (PCs), and evaluate SIs. Characteristic wavelengths (CWs) were selected using CARS. Finally, the full wavelengths, CWs, effective PCs, SIs, and significant SIs were divided into 14 datasets (DS1–DS14) and used as inputs to build the classification models. Models’ performances were evaluated based on the classification accuracy for both the overall and individual classes. Our results suggest that the FLS comprised of five classes based on the proportion of total leaf surface covered with FLS. In the PCA and SI combination model, 5 PCs and 20 SIs with higher weight coefficient of each PC were extracted. For hyperspectral data, 20 CWs and 26 effective PCs were also selected. Out of the 14 datasets, the model input variables provided by five datasets (DS2, DS3, DS4, DS10, and DS11) were more superior than those of full wavelengths (DS1) both in support vector machine (SVM) and least squares support vector machine (LS-SVM) classifiers. The models developed using these five datasets achieved overall accuracies ranging from 91.8% to 94.5% in SVM, and 94.5% to 97.3% in LS-SVM. In addition, they improved the classification accuracies by 0.9% to 3.6% (SVM) and 0.9% to 3.7% (LS-SVM).
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spelling pubmed-84156062021-09-04 Classification of soybean frogeye leaf spot disease using leaf hyperspectral reflectance Liu, Shuang Yu, Haiye Sui, Yuanyuan Zhou, Haigen Zhang, Junhe Kong, Lijuan Dang, Jingmin Zhang, Lei PLoS One Research Article In this study, the feasibility of classifying soybean frogeye leaf spot (FLS) is investigated. Leaf images and hyperspectral reflectance data of healthy and FLS diseased soybean leaves were acquired. First, image processing was used to classify FLS to create a reference for subsequent analysis of hyperspectral data. Then, dimensionality reduction methods of hyperspectral data were used to obtain the relevant information pertaining to FLS. Three single methods, namely spectral index (SI), principal component analysis (PCA), and competitive adaptive reweighted sampling (CARS), along with a PCA and SI combined method, were included. PCA was used to select the effective principal components (PCs), and evaluate SIs. Characteristic wavelengths (CWs) were selected using CARS. Finally, the full wavelengths, CWs, effective PCs, SIs, and significant SIs were divided into 14 datasets (DS1–DS14) and used as inputs to build the classification models. Models’ performances were evaluated based on the classification accuracy for both the overall and individual classes. Our results suggest that the FLS comprised of five classes based on the proportion of total leaf surface covered with FLS. In the PCA and SI combination model, 5 PCs and 20 SIs with higher weight coefficient of each PC were extracted. For hyperspectral data, 20 CWs and 26 effective PCs were also selected. Out of the 14 datasets, the model input variables provided by five datasets (DS2, DS3, DS4, DS10, and DS11) were more superior than those of full wavelengths (DS1) both in support vector machine (SVM) and least squares support vector machine (LS-SVM) classifiers. The models developed using these five datasets achieved overall accuracies ranging from 91.8% to 94.5% in SVM, and 94.5% to 97.3% in LS-SVM. In addition, they improved the classification accuracies by 0.9% to 3.6% (SVM) and 0.9% to 3.7% (LS-SVM). Public Library of Science 2021-09-03 /pmc/articles/PMC8415606/ /pubmed/34478465 http://dx.doi.org/10.1371/journal.pone.0257008 Text en © 2021 Liu et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Liu, Shuang
Yu, Haiye
Sui, Yuanyuan
Zhou, Haigen
Zhang, Junhe
Kong, Lijuan
Dang, Jingmin
Zhang, Lei
Classification of soybean frogeye leaf spot disease using leaf hyperspectral reflectance
title Classification of soybean frogeye leaf spot disease using leaf hyperspectral reflectance
title_full Classification of soybean frogeye leaf spot disease using leaf hyperspectral reflectance
title_fullStr Classification of soybean frogeye leaf spot disease using leaf hyperspectral reflectance
title_full_unstemmed Classification of soybean frogeye leaf spot disease using leaf hyperspectral reflectance
title_short Classification of soybean frogeye leaf spot disease using leaf hyperspectral reflectance
title_sort classification of soybean frogeye leaf spot disease using leaf hyperspectral reflectance
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8415606/
https://www.ncbi.nlm.nih.gov/pubmed/34478465
http://dx.doi.org/10.1371/journal.pone.0257008
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