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Automatic Sleep Staging Algorithm Based on Time Attention Mechanism
The most important part of sleep quality assessment is the automatic classification of sleep stages. Sleep staging is helpful in the diagnosis of sleep-related diseases. This study proposes an automatic sleep staging algorithm based on the time attention mechanism. Time-frequency and non-linear feat...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8416031/ https://www.ncbi.nlm.nih.gov/pubmed/34483864 http://dx.doi.org/10.3389/fnhum.2021.692054 |
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author | Feng, Li-Xiao Li, Xin Wang, Hong-Yu Zheng, Wen-Yin Zhang, Yong-Qing Gao, Dong-Rui Wang, Man-Qing |
author_facet | Feng, Li-Xiao Li, Xin Wang, Hong-Yu Zheng, Wen-Yin Zhang, Yong-Qing Gao, Dong-Rui Wang, Man-Qing |
author_sort | Feng, Li-Xiao |
collection | PubMed |
description | The most important part of sleep quality assessment is the automatic classification of sleep stages. Sleep staging is helpful in the diagnosis of sleep-related diseases. This study proposes an automatic sleep staging algorithm based on the time attention mechanism. Time-frequency and non-linear features are extracted from the physiological signals of six channels and then normalized. The time attention mechanism combined with the two-way bi-directional gated recurrent unit (GRU) was used to reduce computing resources and time costs, and the conditional random field (CRF) was used to obtain information between tags. After five-fold cross-validation on the Sleep-EDF dataset, the values of accuracy, WF1, and Kappa were 0.9218, 0.9177, and 0.8751, respectively. After five-fold cross-validation on the our own dataset, the values of accuracy, WF1, and Kappa were 0.9006, 0.8991, and 0.8664, respectively, which is better than the result of the latest algorithm. In the study of sleep staging, the recognition rate of the N1 stage was low, and the imbalance has always been a problem. Therefore, this study introduces a type of balancing strategy. By adopting the proposed strategy, SEN-N1 and ACC of 0.7 and 0.86, respectively, can be achieved. The experimental results show that compared to the latest method, the proposed model can achieve significantly better performance and significantly improve the recognition rate of the N1 period. The performance comparison of different channels shows that even when the EEG channel was not used, considerable accuracy can be obtained. |
format | Online Article Text |
id | pubmed-8416031 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-84160312021-09-04 Automatic Sleep Staging Algorithm Based on Time Attention Mechanism Feng, Li-Xiao Li, Xin Wang, Hong-Yu Zheng, Wen-Yin Zhang, Yong-Qing Gao, Dong-Rui Wang, Man-Qing Front Hum Neurosci Human Neuroscience The most important part of sleep quality assessment is the automatic classification of sleep stages. Sleep staging is helpful in the diagnosis of sleep-related diseases. This study proposes an automatic sleep staging algorithm based on the time attention mechanism. Time-frequency and non-linear features are extracted from the physiological signals of six channels and then normalized. The time attention mechanism combined with the two-way bi-directional gated recurrent unit (GRU) was used to reduce computing resources and time costs, and the conditional random field (CRF) was used to obtain information between tags. After five-fold cross-validation on the Sleep-EDF dataset, the values of accuracy, WF1, and Kappa were 0.9218, 0.9177, and 0.8751, respectively. After five-fold cross-validation on the our own dataset, the values of accuracy, WF1, and Kappa were 0.9006, 0.8991, and 0.8664, respectively, which is better than the result of the latest algorithm. In the study of sleep staging, the recognition rate of the N1 stage was low, and the imbalance has always been a problem. Therefore, this study introduces a type of balancing strategy. By adopting the proposed strategy, SEN-N1 and ACC of 0.7 and 0.86, respectively, can be achieved. The experimental results show that compared to the latest method, the proposed model can achieve significantly better performance and significantly improve the recognition rate of the N1 period. The performance comparison of different channels shows that even when the EEG channel was not used, considerable accuracy can be obtained. Frontiers Media S.A. 2021-08-17 /pmc/articles/PMC8416031/ /pubmed/34483864 http://dx.doi.org/10.3389/fnhum.2021.692054 Text en Copyright © 2021 Feng, Li, Wang, Zheng, Zhang, Gao and Wang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Human Neuroscience Feng, Li-Xiao Li, Xin Wang, Hong-Yu Zheng, Wen-Yin Zhang, Yong-Qing Gao, Dong-Rui Wang, Man-Qing Automatic Sleep Staging Algorithm Based on Time Attention Mechanism |
title | Automatic Sleep Staging Algorithm Based on Time Attention Mechanism |
title_full | Automatic Sleep Staging Algorithm Based on Time Attention Mechanism |
title_fullStr | Automatic Sleep Staging Algorithm Based on Time Attention Mechanism |
title_full_unstemmed | Automatic Sleep Staging Algorithm Based on Time Attention Mechanism |
title_short | Automatic Sleep Staging Algorithm Based on Time Attention Mechanism |
title_sort | automatic sleep staging algorithm based on time attention mechanism |
topic | Human Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8416031/ https://www.ncbi.nlm.nih.gov/pubmed/34483864 http://dx.doi.org/10.3389/fnhum.2021.692054 |
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