Cargando…

Drawing Reproducible Conclusions from Observational Clinical Data with OHDSI

Objective : The current observational research literature shows extensive publication bias and contradiction. The Observational Health Data Sciences and Informatics (OHDSI) initiative seeks to improve research reproducibility through open science. Methods : OHDSI has created an international federat...

Descripción completa

Detalles Bibliográficos
Autores principales: Hripcsak, George, Schuemie, Martijn J., Madigan, David, Ryan, Patrick B., Suchard, Marc A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Georg Thieme Verlag KG 2021
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8416226/
https://www.ncbi.nlm.nih.gov/pubmed/33882595
http://dx.doi.org/10.1055/s-0041-1726481
_version_ 1783748135256850432
author Hripcsak, George
Schuemie, Martijn J.
Madigan, David
Ryan, Patrick B.
Suchard, Marc A.
author_facet Hripcsak, George
Schuemie, Martijn J.
Madigan, David
Ryan, Patrick B.
Suchard, Marc A.
author_sort Hripcsak, George
collection PubMed
description Objective : The current observational research literature shows extensive publication bias and contradiction. The Observational Health Data Sciences and Informatics (OHDSI) initiative seeks to improve research reproducibility through open science. Methods : OHDSI has created an international federated data source of electronic health records and administrative claims that covers nearly 10% of the world’s population. Using a common data model with a practical schema and extensive vocabulary mappings, data from around the world follow the identical format. OHDSI’s research methods emphasize reproducibility, with a large-scale approach to addressing confounding using propensity score adjustment with extensive diagnostics; negative and positive control hypotheses to test for residual systematic error; a variety of data sources to assess consistency and generalizability; a completely open approach including protocol, software, models, parameters, and raw results so that studies can be externally verified; and the study of many hypotheses in parallel so that the operating characteristics of the methods can be assessed. Results : OHDSI has already produced findings in areas like hypertension treatment that are being incorporated into practice, and it has produced rigorous studies of COVID-19 that have aided government agencies in their treatment decisions, that have characterized the disease extensively, that have estimated the comparative effects of treatments, and that the predict likelihood of advancing to serious complications. Conclusions : OHDSI practices open science and incorporates a series of methods to address reproducibility. It has produced important results in several areas, including hypertension therapy and COVID-19 research.
format Online
Article
Text
id pubmed-8416226
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Georg Thieme Verlag KG
record_format MEDLINE/PubMed
spelling pubmed-84162262021-09-07 Drawing Reproducible Conclusions from Observational Clinical Data with OHDSI Hripcsak, George Schuemie, Martijn J. Madigan, David Ryan, Patrick B. Suchard, Marc A. Yearb Med Inform Objective : The current observational research literature shows extensive publication bias and contradiction. The Observational Health Data Sciences and Informatics (OHDSI) initiative seeks to improve research reproducibility through open science. Methods : OHDSI has created an international federated data source of electronic health records and administrative claims that covers nearly 10% of the world’s population. Using a common data model with a practical schema and extensive vocabulary mappings, data from around the world follow the identical format. OHDSI’s research methods emphasize reproducibility, with a large-scale approach to addressing confounding using propensity score adjustment with extensive diagnostics; negative and positive control hypotheses to test for residual systematic error; a variety of data sources to assess consistency and generalizability; a completely open approach including protocol, software, models, parameters, and raw results so that studies can be externally verified; and the study of many hypotheses in parallel so that the operating characteristics of the methods can be assessed. Results : OHDSI has already produced findings in areas like hypertension treatment that are being incorporated into practice, and it has produced rigorous studies of COVID-19 that have aided government agencies in their treatment decisions, that have characterized the disease extensively, that have estimated the comparative effects of treatments, and that the predict likelihood of advancing to serious complications. Conclusions : OHDSI practices open science and incorporates a series of methods to address reproducibility. It has produced important results in several areas, including hypertension therapy and COVID-19 research. Georg Thieme Verlag KG 2021-08 2021-04-21 /pmc/articles/PMC8416226/ /pubmed/33882595 http://dx.doi.org/10.1055/s-0041-1726481 Text en IMIA and Thieme. This is an open access article published by Thieme under the terms of the Creative Commons Attribution-NonDerivative-NonCommercial License, permitting copying and reproduction so long as the original work is given appropriate credit. Contents may not be used for commercial purposes, or adapted, remixed, transformed or built upon. ( https://creativecommons.org/licenses/by-nc-nd/4.0/ ) https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivatives License, which permits unrestricted reproduction and distribution, for non-commercial purposes only; and use and reproduction, but not distribution, of adapted material for non-commercial purposes only, provided the original work is properly cited.
spellingShingle Hripcsak, George
Schuemie, Martijn J.
Madigan, David
Ryan, Patrick B.
Suchard, Marc A.
Drawing Reproducible Conclusions from Observational Clinical Data with OHDSI
title Drawing Reproducible Conclusions from Observational Clinical Data with OHDSI
title_full Drawing Reproducible Conclusions from Observational Clinical Data with OHDSI
title_fullStr Drawing Reproducible Conclusions from Observational Clinical Data with OHDSI
title_full_unstemmed Drawing Reproducible Conclusions from Observational Clinical Data with OHDSI
title_short Drawing Reproducible Conclusions from Observational Clinical Data with OHDSI
title_sort drawing reproducible conclusions from observational clinical data with ohdsi
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8416226/
https://www.ncbi.nlm.nih.gov/pubmed/33882595
http://dx.doi.org/10.1055/s-0041-1726481
work_keys_str_mv AT hripcsakgeorge drawingreproducibleconclusionsfromobservationalclinicaldatawithohdsi
AT schuemiemartijnj drawingreproducibleconclusionsfromobservationalclinicaldatawithohdsi
AT madigandavid drawingreproducibleconclusionsfromobservationalclinicaldatawithohdsi
AT ryanpatrickb drawingreproducibleconclusionsfromobservationalclinicaldatawithohdsi
AT suchardmarca drawingreproducibleconclusionsfromobservationalclinicaldatawithohdsi