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Overall Survival Prediction for Gliomas Using a Novel Compound Approach

As a highly malignant tumor, the incidence and mortality of glioma are not optimistic. Predicting the survival time of patients with glioma by extracting the feature information from gliomas is beneficial for doctors to develop more targeted treatments. Magnetic resonance imaging (MRI) is a way to q...

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Autores principales: Huang, He, Zhang, Wenbo, Fang, Ying, Hong, Jialing, Su, Shuaixi, Lai, Xiaobo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8416476/
https://www.ncbi.nlm.nih.gov/pubmed/34490121
http://dx.doi.org/10.3389/fonc.2021.724191
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author Huang, He
Zhang, Wenbo
Fang, Ying
Hong, Jialing
Su, Shuaixi
Lai, Xiaobo
author_facet Huang, He
Zhang, Wenbo
Fang, Ying
Hong, Jialing
Su, Shuaixi
Lai, Xiaobo
author_sort Huang, He
collection PubMed
description As a highly malignant tumor, the incidence and mortality of glioma are not optimistic. Predicting the survival time of patients with glioma by extracting the feature information from gliomas is beneficial for doctors to develop more targeted treatments. Magnetic resonance imaging (MRI) is a way to quickly and clearly capture the details of brain tissue. However, manually segmenting brain tumors from MRI will cost doctors a lot of energy, and doctors can only vaguely estimate the survival time of glioma patients, which are not conducive to the formulation of treatment plans. Therefore, automatically segmenting brain tumors and accurately predicting survival time has important significance. In this article, we first propose the NLSE-VNet model, which integrates the Non-Local module and the Squeeze-and-Excitation module into V-Net to segment three brain tumor sub-regions in multimodal MRI. Then extract the intensity, texture, wavelet, shape and other radiological features from the tumor area, and use the CNN network to extract the deep features. The factor analysis method is used to reduce the dimensionality of features, and finally the dimensionality-reduced features and clinical features such as age and tumor grade are combined into the random forest regression model to predict survival. We evaluate the effect on the BraTS 2019 and BraTS 2020 datasets. The average Dice of brain tumor segmentation tasks up to 79% and the average RMSE of the survival predictive task is as low as 311.5. The results indicate that the method in this paper has great advantages in segmentation and survival prediction of gliomas.
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spelling pubmed-84164762021-09-05 Overall Survival Prediction for Gliomas Using a Novel Compound Approach Huang, He Zhang, Wenbo Fang, Ying Hong, Jialing Su, Shuaixi Lai, Xiaobo Front Oncol Oncology As a highly malignant tumor, the incidence and mortality of glioma are not optimistic. Predicting the survival time of patients with glioma by extracting the feature information from gliomas is beneficial for doctors to develop more targeted treatments. Magnetic resonance imaging (MRI) is a way to quickly and clearly capture the details of brain tissue. However, manually segmenting brain tumors from MRI will cost doctors a lot of energy, and doctors can only vaguely estimate the survival time of glioma patients, which are not conducive to the formulation of treatment plans. Therefore, automatically segmenting brain tumors and accurately predicting survival time has important significance. In this article, we first propose the NLSE-VNet model, which integrates the Non-Local module and the Squeeze-and-Excitation module into V-Net to segment three brain tumor sub-regions in multimodal MRI. Then extract the intensity, texture, wavelet, shape and other radiological features from the tumor area, and use the CNN network to extract the deep features. The factor analysis method is used to reduce the dimensionality of features, and finally the dimensionality-reduced features and clinical features such as age and tumor grade are combined into the random forest regression model to predict survival. We evaluate the effect on the BraTS 2019 and BraTS 2020 datasets. The average Dice of brain tumor segmentation tasks up to 79% and the average RMSE of the survival predictive task is as low as 311.5. The results indicate that the method in this paper has great advantages in segmentation and survival prediction of gliomas. Frontiers Media S.A. 2021-08-18 /pmc/articles/PMC8416476/ /pubmed/34490121 http://dx.doi.org/10.3389/fonc.2021.724191 Text en Copyright © 2021 Huang, Zhang, Fang, Hong, Su and Lai https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Huang, He
Zhang, Wenbo
Fang, Ying
Hong, Jialing
Su, Shuaixi
Lai, Xiaobo
Overall Survival Prediction for Gliomas Using a Novel Compound Approach
title Overall Survival Prediction for Gliomas Using a Novel Compound Approach
title_full Overall Survival Prediction for Gliomas Using a Novel Compound Approach
title_fullStr Overall Survival Prediction for Gliomas Using a Novel Compound Approach
title_full_unstemmed Overall Survival Prediction for Gliomas Using a Novel Compound Approach
title_short Overall Survival Prediction for Gliomas Using a Novel Compound Approach
title_sort overall survival prediction for gliomas using a novel compound approach
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8416476/
https://www.ncbi.nlm.nih.gov/pubmed/34490121
http://dx.doi.org/10.3389/fonc.2021.724191
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