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Radiomics feature stability of open-source software evaluated on apparent diffusion coefficient maps in head and neck cancer
Radiomics is a promising technique for discovering image based biomarkers of therapy response in cancer. Reproducibility of radiomics features is a known issue that is addressed by the image biomarker standardisation initiative (IBSI), but it remains challenging to interpret previously published rad...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8417253/ https://www.ncbi.nlm.nih.gov/pubmed/34480036 http://dx.doi.org/10.1038/s41598-021-96600-4 |
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author | Korte, James C. Cardenas, Carlos Hardcastle, Nicholas Kron, Tomas Wang, Jihong Bahig, Houda Elgohari, Baher Ger, Rachel Court, Laurence Fuller, Clifton D. Ng, Sweet Ping |
author_facet | Korte, James C. Cardenas, Carlos Hardcastle, Nicholas Kron, Tomas Wang, Jihong Bahig, Houda Elgohari, Baher Ger, Rachel Court, Laurence Fuller, Clifton D. Ng, Sweet Ping |
author_sort | Korte, James C. |
collection | PubMed |
description | Radiomics is a promising technique for discovering image based biomarkers of therapy response in cancer. Reproducibility of radiomics features is a known issue that is addressed by the image biomarker standardisation initiative (IBSI), but it remains challenging to interpret previously published radiomics signatures. This study investigates the reproducibility of radiomics features calculated with two widely used radiomics software packages (IBEX, MaZda) in comparison to an IBSI compliant software package (PyRadiomics). Intensity histogram, shape and textural features were extracted from 334 diffusion weighted magnetic resonance images of 59 head and neck cancer (HNC) patients from the PREDICT-HN observational radiotherapy study. Based on name and linear correlation, PyRadiomics shares 83 features with IBEX and 49 features with MaZda, a sub-set of well correlated features are considered reproducible (IBEX: 15 features, MaZda: 18 features). We explore the impact of including non-reproducible radiomics features in a HNC radiotherapy response model. It is possible to classify equivalent patient groups using radiomic features from either software, but only when restricting the model to reliable features using a correlation threshold method. This is relevant for clinical biomarker validation trials as it provides a framework to assess the reproducibility of reported radiomic signatures from existing trials. |
format | Online Article Text |
id | pubmed-8417253 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-84172532021-09-07 Radiomics feature stability of open-source software evaluated on apparent diffusion coefficient maps in head and neck cancer Korte, James C. Cardenas, Carlos Hardcastle, Nicholas Kron, Tomas Wang, Jihong Bahig, Houda Elgohari, Baher Ger, Rachel Court, Laurence Fuller, Clifton D. Ng, Sweet Ping Sci Rep Article Radiomics is a promising technique for discovering image based biomarkers of therapy response in cancer. Reproducibility of radiomics features is a known issue that is addressed by the image biomarker standardisation initiative (IBSI), but it remains challenging to interpret previously published radiomics signatures. This study investigates the reproducibility of radiomics features calculated with two widely used radiomics software packages (IBEX, MaZda) in comparison to an IBSI compliant software package (PyRadiomics). Intensity histogram, shape and textural features were extracted from 334 diffusion weighted magnetic resonance images of 59 head and neck cancer (HNC) patients from the PREDICT-HN observational radiotherapy study. Based on name and linear correlation, PyRadiomics shares 83 features with IBEX and 49 features with MaZda, a sub-set of well correlated features are considered reproducible (IBEX: 15 features, MaZda: 18 features). We explore the impact of including non-reproducible radiomics features in a HNC radiotherapy response model. It is possible to classify equivalent patient groups using radiomic features from either software, but only when restricting the model to reliable features using a correlation threshold method. This is relevant for clinical biomarker validation trials as it provides a framework to assess the reproducibility of reported radiomic signatures from existing trials. Nature Publishing Group UK 2021-09-03 /pmc/articles/PMC8417253/ /pubmed/34480036 http://dx.doi.org/10.1038/s41598-021-96600-4 Text en © The Author(s) 2021, corrected publication 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Korte, James C. Cardenas, Carlos Hardcastle, Nicholas Kron, Tomas Wang, Jihong Bahig, Houda Elgohari, Baher Ger, Rachel Court, Laurence Fuller, Clifton D. Ng, Sweet Ping Radiomics feature stability of open-source software evaluated on apparent diffusion coefficient maps in head and neck cancer |
title | Radiomics feature stability of open-source software evaluated on apparent diffusion coefficient maps in head and neck cancer |
title_full | Radiomics feature stability of open-source software evaluated on apparent diffusion coefficient maps in head and neck cancer |
title_fullStr | Radiomics feature stability of open-source software evaluated on apparent diffusion coefficient maps in head and neck cancer |
title_full_unstemmed | Radiomics feature stability of open-source software evaluated on apparent diffusion coefficient maps in head and neck cancer |
title_short | Radiomics feature stability of open-source software evaluated on apparent diffusion coefficient maps in head and neck cancer |
title_sort | radiomics feature stability of open-source software evaluated on apparent diffusion coefficient maps in head and neck cancer |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8417253/ https://www.ncbi.nlm.nih.gov/pubmed/34480036 http://dx.doi.org/10.1038/s41598-021-96600-4 |
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