Cargando…

Radiomics feature stability of open-source software evaluated on apparent diffusion coefficient maps in head and neck cancer

Radiomics is a promising technique for discovering image based biomarkers of therapy response in cancer. Reproducibility of radiomics features is a known issue that is addressed by the image biomarker standardisation initiative (IBSI), but it remains challenging to interpret previously published rad...

Descripción completa

Detalles Bibliográficos
Autores principales: Korte, James C., Cardenas, Carlos, Hardcastle, Nicholas, Kron, Tomas, Wang, Jihong, Bahig, Houda, Elgohari, Baher, Ger, Rachel, Court, Laurence, Fuller, Clifton D., Ng, Sweet Ping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8417253/
https://www.ncbi.nlm.nih.gov/pubmed/34480036
http://dx.doi.org/10.1038/s41598-021-96600-4
_version_ 1783748338742460416
author Korte, James C.
Cardenas, Carlos
Hardcastle, Nicholas
Kron, Tomas
Wang, Jihong
Bahig, Houda
Elgohari, Baher
Ger, Rachel
Court, Laurence
Fuller, Clifton D.
Ng, Sweet Ping
author_facet Korte, James C.
Cardenas, Carlos
Hardcastle, Nicholas
Kron, Tomas
Wang, Jihong
Bahig, Houda
Elgohari, Baher
Ger, Rachel
Court, Laurence
Fuller, Clifton D.
Ng, Sweet Ping
author_sort Korte, James C.
collection PubMed
description Radiomics is a promising technique for discovering image based biomarkers of therapy response in cancer. Reproducibility of radiomics features is a known issue that is addressed by the image biomarker standardisation initiative (IBSI), but it remains challenging to interpret previously published radiomics signatures. This study investigates the reproducibility of radiomics features calculated with two widely used radiomics software packages (IBEX, MaZda) in comparison to an IBSI compliant software package (PyRadiomics). Intensity histogram, shape and textural features were extracted from 334 diffusion weighted magnetic resonance images of 59 head and neck cancer (HNC) patients from the PREDICT-HN observational radiotherapy study. Based on name and linear correlation, PyRadiomics shares 83 features with IBEX and 49 features with MaZda, a sub-set of well correlated features are considered reproducible (IBEX: 15 features, MaZda: 18 features). We explore the impact of including non-reproducible radiomics features in a HNC radiotherapy response model. It is possible to classify equivalent patient groups using radiomic features from either software, but only when restricting the model to reliable features using a correlation threshold method. This is relevant for clinical biomarker validation trials as it provides a framework to assess the reproducibility of reported radiomic signatures from existing trials.
format Online
Article
Text
id pubmed-8417253
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-84172532021-09-07 Radiomics feature stability of open-source software evaluated on apparent diffusion coefficient maps in head and neck cancer Korte, James C. Cardenas, Carlos Hardcastle, Nicholas Kron, Tomas Wang, Jihong Bahig, Houda Elgohari, Baher Ger, Rachel Court, Laurence Fuller, Clifton D. Ng, Sweet Ping Sci Rep Article Radiomics is a promising technique for discovering image based biomarkers of therapy response in cancer. Reproducibility of radiomics features is a known issue that is addressed by the image biomarker standardisation initiative (IBSI), but it remains challenging to interpret previously published radiomics signatures. This study investigates the reproducibility of radiomics features calculated with two widely used radiomics software packages (IBEX, MaZda) in comparison to an IBSI compliant software package (PyRadiomics). Intensity histogram, shape and textural features were extracted from 334 diffusion weighted magnetic resonance images of 59 head and neck cancer (HNC) patients from the PREDICT-HN observational radiotherapy study. Based on name and linear correlation, PyRadiomics shares 83 features with IBEX and 49 features with MaZda, a sub-set of well correlated features are considered reproducible (IBEX: 15 features, MaZda: 18 features). We explore the impact of including non-reproducible radiomics features in a HNC radiotherapy response model. It is possible to classify equivalent patient groups using radiomic features from either software, but only when restricting the model to reliable features using a correlation threshold method. This is relevant for clinical biomarker validation trials as it provides a framework to assess the reproducibility of reported radiomic signatures from existing trials. Nature Publishing Group UK 2021-09-03 /pmc/articles/PMC8417253/ /pubmed/34480036 http://dx.doi.org/10.1038/s41598-021-96600-4 Text en © The Author(s) 2021, corrected publication 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Korte, James C.
Cardenas, Carlos
Hardcastle, Nicholas
Kron, Tomas
Wang, Jihong
Bahig, Houda
Elgohari, Baher
Ger, Rachel
Court, Laurence
Fuller, Clifton D.
Ng, Sweet Ping
Radiomics feature stability of open-source software evaluated on apparent diffusion coefficient maps in head and neck cancer
title Radiomics feature stability of open-source software evaluated on apparent diffusion coefficient maps in head and neck cancer
title_full Radiomics feature stability of open-source software evaluated on apparent diffusion coefficient maps in head and neck cancer
title_fullStr Radiomics feature stability of open-source software evaluated on apparent diffusion coefficient maps in head and neck cancer
title_full_unstemmed Radiomics feature stability of open-source software evaluated on apparent diffusion coefficient maps in head and neck cancer
title_short Radiomics feature stability of open-source software evaluated on apparent diffusion coefficient maps in head and neck cancer
title_sort radiomics feature stability of open-source software evaluated on apparent diffusion coefficient maps in head and neck cancer
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8417253/
https://www.ncbi.nlm.nih.gov/pubmed/34480036
http://dx.doi.org/10.1038/s41598-021-96600-4
work_keys_str_mv AT kortejamesc radiomicsfeaturestabilityofopensourcesoftwareevaluatedonapparentdiffusioncoefficientmapsinheadandneckcancer
AT cardenascarlos radiomicsfeaturestabilityofopensourcesoftwareevaluatedonapparentdiffusioncoefficientmapsinheadandneckcancer
AT hardcastlenicholas radiomicsfeaturestabilityofopensourcesoftwareevaluatedonapparentdiffusioncoefficientmapsinheadandneckcancer
AT krontomas radiomicsfeaturestabilityofopensourcesoftwareevaluatedonapparentdiffusioncoefficientmapsinheadandneckcancer
AT wangjihong radiomicsfeaturestabilityofopensourcesoftwareevaluatedonapparentdiffusioncoefficientmapsinheadandneckcancer
AT bahighouda radiomicsfeaturestabilityofopensourcesoftwareevaluatedonapparentdiffusioncoefficientmapsinheadandneckcancer
AT elgoharibaher radiomicsfeaturestabilityofopensourcesoftwareevaluatedonapparentdiffusioncoefficientmapsinheadandneckcancer
AT gerrachel radiomicsfeaturestabilityofopensourcesoftwareevaluatedonapparentdiffusioncoefficientmapsinheadandneckcancer
AT courtlaurence radiomicsfeaturestabilityofopensourcesoftwareevaluatedonapparentdiffusioncoefficientmapsinheadandneckcancer
AT fullercliftond radiomicsfeaturestabilityofopensourcesoftwareevaluatedonapparentdiffusioncoefficientmapsinheadandneckcancer
AT ngsweetping radiomicsfeaturestabilityofopensourcesoftwareevaluatedonapparentdiffusioncoefficientmapsinheadandneckcancer