Cargando…
A Multichannel Deep Neural Network for Retina Vessel Segmentation via a Fusion Mechanism
Changes in fundus blood vessels reflect the occurrence of eye diseases, and from this, we can explore other physical diseases that cause fundus lesions, such as diabetes and hypertension complication. However, the existing computational methods lack high efficiency and precision segmentation for the...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8417313/ https://www.ncbi.nlm.nih.gov/pubmed/34490220 http://dx.doi.org/10.3389/fbioe.2021.697915 |
_version_ | 1783748352827981824 |
---|---|
author | Ding, Jiaqi Zhang, Zehua Tang, Jijun Guo, Fei |
author_facet | Ding, Jiaqi Zhang, Zehua Tang, Jijun Guo, Fei |
author_sort | Ding, Jiaqi |
collection | PubMed |
description | Changes in fundus blood vessels reflect the occurrence of eye diseases, and from this, we can explore other physical diseases that cause fundus lesions, such as diabetes and hypertension complication. However, the existing computational methods lack high efficiency and precision segmentation for the vascular ends and thin retina vessels. It is important to construct a reliable and quantitative automatic diagnostic method for improving the diagnosis efficiency. In this study, we propose a multichannel deep neural network for retina vessel segmentation. First, we apply U-net on original and thin (or thick) vessels for multi-objective optimization for purposively training thick and thin vessels. Then, we design a specific fusion mechanism for combining three kinds of prediction probability maps into a final binary segmentation map. Experiments show that our method can effectively improve the segmentation performances of thin blood vessels and vascular ends. It outperforms many current excellent vessel segmentation methods on three public datasets. In particular, it is pretty impressive that we achieve the best F1-score of 0.8247 on the DRIVE dataset and 0.8239 on the STARE dataset. The findings of this study have the potential for the application in an automated retinal image analysis, and it may provide a new, general, and high-performance computing framework for image segmentation. |
format | Online Article Text |
id | pubmed-8417313 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-84173132021-09-05 A Multichannel Deep Neural Network for Retina Vessel Segmentation via a Fusion Mechanism Ding, Jiaqi Zhang, Zehua Tang, Jijun Guo, Fei Front Bioeng Biotechnol Bioengineering and Biotechnology Changes in fundus blood vessels reflect the occurrence of eye diseases, and from this, we can explore other physical diseases that cause fundus lesions, such as diabetes and hypertension complication. However, the existing computational methods lack high efficiency and precision segmentation for the vascular ends and thin retina vessels. It is important to construct a reliable and quantitative automatic diagnostic method for improving the diagnosis efficiency. In this study, we propose a multichannel deep neural network for retina vessel segmentation. First, we apply U-net on original and thin (or thick) vessels for multi-objective optimization for purposively training thick and thin vessels. Then, we design a specific fusion mechanism for combining three kinds of prediction probability maps into a final binary segmentation map. Experiments show that our method can effectively improve the segmentation performances of thin blood vessels and vascular ends. It outperforms many current excellent vessel segmentation methods on three public datasets. In particular, it is pretty impressive that we achieve the best F1-score of 0.8247 on the DRIVE dataset and 0.8239 on the STARE dataset. The findings of this study have the potential for the application in an automated retinal image analysis, and it may provide a new, general, and high-performance computing framework for image segmentation. Frontiers Media S.A. 2021-08-19 /pmc/articles/PMC8417313/ /pubmed/34490220 http://dx.doi.org/10.3389/fbioe.2021.697915 Text en Copyright © 2021 Ding, Zhang, Tang and Guo. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Bioengineering and Biotechnology Ding, Jiaqi Zhang, Zehua Tang, Jijun Guo, Fei A Multichannel Deep Neural Network for Retina Vessel Segmentation via a Fusion Mechanism |
title | A Multichannel Deep Neural Network for Retina Vessel Segmentation via a Fusion Mechanism |
title_full | A Multichannel Deep Neural Network for Retina Vessel Segmentation via a Fusion Mechanism |
title_fullStr | A Multichannel Deep Neural Network for Retina Vessel Segmentation via a Fusion Mechanism |
title_full_unstemmed | A Multichannel Deep Neural Network for Retina Vessel Segmentation via a Fusion Mechanism |
title_short | A Multichannel Deep Neural Network for Retina Vessel Segmentation via a Fusion Mechanism |
title_sort | multichannel deep neural network for retina vessel segmentation via a fusion mechanism |
topic | Bioengineering and Biotechnology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8417313/ https://www.ncbi.nlm.nih.gov/pubmed/34490220 http://dx.doi.org/10.3389/fbioe.2021.697915 |
work_keys_str_mv | AT dingjiaqi amultichanneldeepneuralnetworkforretinavesselsegmentationviaafusionmechanism AT zhangzehua amultichanneldeepneuralnetworkforretinavesselsegmentationviaafusionmechanism AT tangjijun amultichanneldeepneuralnetworkforretinavesselsegmentationviaafusionmechanism AT guofei amultichanneldeepneuralnetworkforretinavesselsegmentationviaafusionmechanism AT dingjiaqi multichanneldeepneuralnetworkforretinavesselsegmentationviaafusionmechanism AT zhangzehua multichanneldeepneuralnetworkforretinavesselsegmentationviaafusionmechanism AT tangjijun multichanneldeepneuralnetworkforretinavesselsegmentationviaafusionmechanism AT guofei multichanneldeepneuralnetworkforretinavesselsegmentationviaafusionmechanism |