Cargando…

A Multichannel Deep Neural Network for Retina Vessel Segmentation via a Fusion Mechanism

Changes in fundus blood vessels reflect the occurrence of eye diseases, and from this, we can explore other physical diseases that cause fundus lesions, such as diabetes and hypertension complication. However, the existing computational methods lack high efficiency and precision segmentation for the...

Descripción completa

Detalles Bibliográficos
Autores principales: Ding, Jiaqi, Zhang, Zehua, Tang, Jijun, Guo, Fei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8417313/
https://www.ncbi.nlm.nih.gov/pubmed/34490220
http://dx.doi.org/10.3389/fbioe.2021.697915
_version_ 1783748352827981824
author Ding, Jiaqi
Zhang, Zehua
Tang, Jijun
Guo, Fei
author_facet Ding, Jiaqi
Zhang, Zehua
Tang, Jijun
Guo, Fei
author_sort Ding, Jiaqi
collection PubMed
description Changes in fundus blood vessels reflect the occurrence of eye diseases, and from this, we can explore other physical diseases that cause fundus lesions, such as diabetes and hypertension complication. However, the existing computational methods lack high efficiency and precision segmentation for the vascular ends and thin retina vessels. It is important to construct a reliable and quantitative automatic diagnostic method for improving the diagnosis efficiency. In this study, we propose a multichannel deep neural network for retina vessel segmentation. First, we apply U-net on original and thin (or thick) vessels for multi-objective optimization for purposively training thick and thin vessels. Then, we design a specific fusion mechanism for combining three kinds of prediction probability maps into a final binary segmentation map. Experiments show that our method can effectively improve the segmentation performances of thin blood vessels and vascular ends. It outperforms many current excellent vessel segmentation methods on three public datasets. In particular, it is pretty impressive that we achieve the best F1-score of 0.8247 on the DRIVE dataset and 0.8239 on the STARE dataset. The findings of this study have the potential for the application in an automated retinal image analysis, and it may provide a new, general, and high-performance computing framework for image segmentation.
format Online
Article
Text
id pubmed-8417313
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-84173132021-09-05 A Multichannel Deep Neural Network for Retina Vessel Segmentation via a Fusion Mechanism Ding, Jiaqi Zhang, Zehua Tang, Jijun Guo, Fei Front Bioeng Biotechnol Bioengineering and Biotechnology Changes in fundus blood vessels reflect the occurrence of eye diseases, and from this, we can explore other physical diseases that cause fundus lesions, such as diabetes and hypertension complication. However, the existing computational methods lack high efficiency and precision segmentation for the vascular ends and thin retina vessels. It is important to construct a reliable and quantitative automatic diagnostic method for improving the diagnosis efficiency. In this study, we propose a multichannel deep neural network for retina vessel segmentation. First, we apply U-net on original and thin (or thick) vessels for multi-objective optimization for purposively training thick and thin vessels. Then, we design a specific fusion mechanism for combining three kinds of prediction probability maps into a final binary segmentation map. Experiments show that our method can effectively improve the segmentation performances of thin blood vessels and vascular ends. It outperforms many current excellent vessel segmentation methods on three public datasets. In particular, it is pretty impressive that we achieve the best F1-score of 0.8247 on the DRIVE dataset and 0.8239 on the STARE dataset. The findings of this study have the potential for the application in an automated retinal image analysis, and it may provide a new, general, and high-performance computing framework for image segmentation. Frontiers Media S.A. 2021-08-19 /pmc/articles/PMC8417313/ /pubmed/34490220 http://dx.doi.org/10.3389/fbioe.2021.697915 Text en Copyright © 2021 Ding, Zhang, Tang and Guo. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Bioengineering and Biotechnology
Ding, Jiaqi
Zhang, Zehua
Tang, Jijun
Guo, Fei
A Multichannel Deep Neural Network for Retina Vessel Segmentation via a Fusion Mechanism
title A Multichannel Deep Neural Network for Retina Vessel Segmentation via a Fusion Mechanism
title_full A Multichannel Deep Neural Network for Retina Vessel Segmentation via a Fusion Mechanism
title_fullStr A Multichannel Deep Neural Network for Retina Vessel Segmentation via a Fusion Mechanism
title_full_unstemmed A Multichannel Deep Neural Network for Retina Vessel Segmentation via a Fusion Mechanism
title_short A Multichannel Deep Neural Network for Retina Vessel Segmentation via a Fusion Mechanism
title_sort multichannel deep neural network for retina vessel segmentation via a fusion mechanism
topic Bioengineering and Biotechnology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8417313/
https://www.ncbi.nlm.nih.gov/pubmed/34490220
http://dx.doi.org/10.3389/fbioe.2021.697915
work_keys_str_mv AT dingjiaqi amultichanneldeepneuralnetworkforretinavesselsegmentationviaafusionmechanism
AT zhangzehua amultichanneldeepneuralnetworkforretinavesselsegmentationviaafusionmechanism
AT tangjijun amultichanneldeepneuralnetworkforretinavesselsegmentationviaafusionmechanism
AT guofei amultichanneldeepneuralnetworkforretinavesselsegmentationviaafusionmechanism
AT dingjiaqi multichanneldeepneuralnetworkforretinavesselsegmentationviaafusionmechanism
AT zhangzehua multichanneldeepneuralnetworkforretinavesselsegmentationviaafusionmechanism
AT tangjijun multichanneldeepneuralnetworkforretinavesselsegmentationviaafusionmechanism
AT guofei multichanneldeepneuralnetworkforretinavesselsegmentationviaafusionmechanism