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Identification of Hub Genes Related to Liver Metastasis of Colorectal Cancer by Integrative Analysis
Liver metastasis of colorectal cancer (LMCRC) severely damages patient health, causing poor prognosis and tumor relapse. Marker genes associated with LMCRC identified by previous study did not meet therapeutic demand. Therefore, it is necessary to identify new biomarkers regulating the metastasis ne...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8417325/ https://www.ncbi.nlm.nih.gov/pubmed/34490113 http://dx.doi.org/10.3389/fonc.2021.714866 |
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author | Liu, Sicheng Zhang, Yaguang Zhang, Su Qiu, Lei Zhang, Bo Han, Junhong |
author_facet | Liu, Sicheng Zhang, Yaguang Zhang, Su Qiu, Lei Zhang, Bo Han, Junhong |
author_sort | Liu, Sicheng |
collection | PubMed |
description | Liver metastasis of colorectal cancer (LMCRC) severely damages patient health, causing poor prognosis and tumor relapse. Marker genes associated with LMCRC identified by previous study did not meet therapeutic demand. Therefore, it is necessary to identify new biomarkers regulating the metastasis network and screen potential drugs for future treatment. Here, we identified that cell adhesion molecules and peroxisome proliferator-activated receptor (PPAR) signaling pathway were significantly enriched by analyzing the integrated-multiple expression profiles. Moreover, analysis with robust rank aggregation approach revealed a total of 138 differentially expressed genes (DEGs), including 108 upexpressed and 30 downexpressed genes. With establishing protein–protein interaction network, we also identified the subnetwork significantly enriching the metastasis-associated hub genes including ALB, APOE, CDH2, and ORM1. ESR2, FOXO3, and SRY were determined as key transcription factors regulating hub genes. In addition, ADH-1, epigallocatechin, CHEMBL1945287, and cochinchinenin C were predicted as potential therapeutic drugs. Moreover, the antimigration capacity of ADH-1 and epigallocatechin were confirmed in CRC cell lines. In conclusion, our findings not only offer opportunities to understand metastasis mechanism but also identify potential therapeutic targets for CRC. |
format | Online Article Text |
id | pubmed-8417325 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-84173252021-09-05 Identification of Hub Genes Related to Liver Metastasis of Colorectal Cancer by Integrative Analysis Liu, Sicheng Zhang, Yaguang Zhang, Su Qiu, Lei Zhang, Bo Han, Junhong Front Oncol Oncology Liver metastasis of colorectal cancer (LMCRC) severely damages patient health, causing poor prognosis and tumor relapse. Marker genes associated with LMCRC identified by previous study did not meet therapeutic demand. Therefore, it is necessary to identify new biomarkers regulating the metastasis network and screen potential drugs for future treatment. Here, we identified that cell adhesion molecules and peroxisome proliferator-activated receptor (PPAR) signaling pathway were significantly enriched by analyzing the integrated-multiple expression profiles. Moreover, analysis with robust rank aggregation approach revealed a total of 138 differentially expressed genes (DEGs), including 108 upexpressed and 30 downexpressed genes. With establishing protein–protein interaction network, we also identified the subnetwork significantly enriching the metastasis-associated hub genes including ALB, APOE, CDH2, and ORM1. ESR2, FOXO3, and SRY were determined as key transcription factors regulating hub genes. In addition, ADH-1, epigallocatechin, CHEMBL1945287, and cochinchinenin C were predicted as potential therapeutic drugs. Moreover, the antimigration capacity of ADH-1 and epigallocatechin were confirmed in CRC cell lines. In conclusion, our findings not only offer opportunities to understand metastasis mechanism but also identify potential therapeutic targets for CRC. Frontiers Media S.A. 2021-08-19 /pmc/articles/PMC8417325/ /pubmed/34490113 http://dx.doi.org/10.3389/fonc.2021.714866 Text en Copyright © 2021 Liu, Zhang, Zhang, Qiu, Zhang and Han https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Oncology Liu, Sicheng Zhang, Yaguang Zhang, Su Qiu, Lei Zhang, Bo Han, Junhong Identification of Hub Genes Related to Liver Metastasis of Colorectal Cancer by Integrative Analysis |
title | Identification of Hub Genes Related to Liver Metastasis of Colorectal Cancer by Integrative Analysis |
title_full | Identification of Hub Genes Related to Liver Metastasis of Colorectal Cancer by Integrative Analysis |
title_fullStr | Identification of Hub Genes Related to Liver Metastasis of Colorectal Cancer by Integrative Analysis |
title_full_unstemmed | Identification of Hub Genes Related to Liver Metastasis of Colorectal Cancer by Integrative Analysis |
title_short | Identification of Hub Genes Related to Liver Metastasis of Colorectal Cancer by Integrative Analysis |
title_sort | identification of hub genes related to liver metastasis of colorectal cancer by integrative analysis |
topic | Oncology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8417325/ https://www.ncbi.nlm.nih.gov/pubmed/34490113 http://dx.doi.org/10.3389/fonc.2021.714866 |
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