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New confinement index and new perspective for comparing countries - COVID-19

Background and objective: In the difficult problem of comparing countries regarding their lockdown measures or deaths caused by the COVID-19, there is still no agreement on what is the best strategy to follow. Thus, we propose a new way of comparison countries that avoids the main difficulties in th...

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Autores principales: da Costa, Joaquim Pinto, Garcia, André
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier B.V. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8418097/
https://www.ncbi.nlm.nih.gov/pubmed/34464767
http://dx.doi.org/10.1016/j.cmpb.2021.106346
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author da Costa, Joaquim Pinto
Garcia, André
author_facet da Costa, Joaquim Pinto
Garcia, André
author_sort da Costa, Joaquim Pinto
collection PubMed
description Background and objective: In the difficult problem of comparing countries regarding their lockdown measures or deaths caused by the COVID-19, there is still no agreement on what is the best strategy to follow. Thus, we propose a new way of comparison countries that avoids the main difficulties in the comparison by using three-dimensional trajectories for this type of data. Methods: We introduce a new index to analyze the level of confinement that each country was subject to overtime, based on the Community Mobility Reports published by Google resorting to Principal Component Analysis. Subsequently, by using longitudinal clustering, we divide the European countries into similar groups according to the COVID-19 obits and also to the confinement index. However, to make the most out of the clustering methods we resort to artificial longitudinal data to evaluate both the methods and the indices. Results: By using artificial data, we discover that Calinski–Harabasz outperformed other internal indices in indicating the real number of clusters. The tests also suggested that [Formula: see text]-means with Euclidean distance was the best method among the ones studied. With the application to both the mobility and fatalities datasets, we found two groups in each one. Conclusions: Our analysis enables us to discover that European northern countries had more mobility during the first confinement and that the deaths caused by COVID-19 started to drop around the 40th day since the first death.
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spelling pubmed-84180972021-09-07 New confinement index and new perspective for comparing countries - COVID-19 da Costa, Joaquim Pinto Garcia, André Comput Methods Programs Biomed Article Background and objective: In the difficult problem of comparing countries regarding their lockdown measures or deaths caused by the COVID-19, there is still no agreement on what is the best strategy to follow. Thus, we propose a new way of comparison countries that avoids the main difficulties in the comparison by using three-dimensional trajectories for this type of data. Methods: We introduce a new index to analyze the level of confinement that each country was subject to overtime, based on the Community Mobility Reports published by Google resorting to Principal Component Analysis. Subsequently, by using longitudinal clustering, we divide the European countries into similar groups according to the COVID-19 obits and also to the confinement index. However, to make the most out of the clustering methods we resort to artificial longitudinal data to evaluate both the methods and the indices. Results: By using artificial data, we discover that Calinski–Harabasz outperformed other internal indices in indicating the real number of clusters. The tests also suggested that [Formula: see text]-means with Euclidean distance was the best method among the ones studied. With the application to both the mobility and fatalities datasets, we found two groups in each one. Conclusions: Our analysis enables us to discover that European northern countries had more mobility during the first confinement and that the deaths caused by COVID-19 started to drop around the 40th day since the first death. Elsevier B.V. 2021-10 2021-08-17 /pmc/articles/PMC8418097/ /pubmed/34464767 http://dx.doi.org/10.1016/j.cmpb.2021.106346 Text en © 2021 Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
da Costa, Joaquim Pinto
Garcia, André
New confinement index and new perspective for comparing countries - COVID-19
title New confinement index and new perspective for comparing countries - COVID-19
title_full New confinement index and new perspective for comparing countries - COVID-19
title_fullStr New confinement index and new perspective for comparing countries - COVID-19
title_full_unstemmed New confinement index and new perspective for comparing countries - COVID-19
title_short New confinement index and new perspective for comparing countries - COVID-19
title_sort new confinement index and new perspective for comparing countries - covid-19
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8418097/
https://www.ncbi.nlm.nih.gov/pubmed/34464767
http://dx.doi.org/10.1016/j.cmpb.2021.106346
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