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The de novo FAIRification process of a registry for vascular anomalies
BACKGROUND: Patient data registries that are FAIR—Findable, Accessible, Interoperable, and Reusable for humans and computers—facilitate research across multiple resources. This is particularly relevant to rare diseases, where data often are scarce and scattered. Specific research questions can be as...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8418729/ https://www.ncbi.nlm.nih.gov/pubmed/34481493 http://dx.doi.org/10.1186/s13023-021-02004-y |
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author | Groenen, Karlijn H. J. Jacobsen, Annika Kersloot, Martijn G. dos Santos Vieira, Bruna van Enckevort, Esther Kaliyaperumal, Rajaram Arts, Derk L. ‘t Hoen, Peter A. C. Cornet, Ronald Roos, Marco Kool, Leo Schultze |
author_facet | Groenen, Karlijn H. J. Jacobsen, Annika Kersloot, Martijn G. dos Santos Vieira, Bruna van Enckevort, Esther Kaliyaperumal, Rajaram Arts, Derk L. ‘t Hoen, Peter A. C. Cornet, Ronald Roos, Marco Kool, Leo Schultze |
author_sort | Groenen, Karlijn H. J. |
collection | PubMed |
description | BACKGROUND: Patient data registries that are FAIR—Findable, Accessible, Interoperable, and Reusable for humans and computers—facilitate research across multiple resources. This is particularly relevant to rare diseases, where data often are scarce and scattered. Specific research questions can be asked across FAIR rare disease registries and other FAIR resources without physically combining the data. Further, FAIR implies well-defined, transparent access conditions, which supports making sensitive data as open as possible and as closed as necessary. RESULTS: We successfully developed and implemented a process of making a rare disease registry for vascular anomalies FAIR from its conception—de novo. Here, we describe the five phases of this process in detail: (i) pre-FAIRification, (ii) facilitating FAIRification, (iii) data collection, (iv) generating FAIR data in real-time, and (v) using FAIR data. This includes the creation of an electronic case report form and a semantic data model of the elements to be collected (in this case: the “Set of Common Data Elements for Rare Disease Registration” released by the European Commission), and the technical implementation of automatic, real-time data FAIRification in an Electronic Data Capture system. Further, we describe how we contribute to the four facets of FAIR, and how our FAIRification process can be reused by other registries. CONCLUSIONS: In conclusion, a detailed de novo FAIRification process of a registry for vascular anomalies is described. To a large extent, the process may be reused by other rare disease registries, and we envision this work to be a substantial contribution to an ecosystem of FAIR rare disease resources. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13023-021-02004-y. |
format | Online Article Text |
id | pubmed-8418729 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-84187292021-09-09 The de novo FAIRification process of a registry for vascular anomalies Groenen, Karlijn H. J. Jacobsen, Annika Kersloot, Martijn G. dos Santos Vieira, Bruna van Enckevort, Esther Kaliyaperumal, Rajaram Arts, Derk L. ‘t Hoen, Peter A. C. Cornet, Ronald Roos, Marco Kool, Leo Schultze Orphanet J Rare Dis Research BACKGROUND: Patient data registries that are FAIR—Findable, Accessible, Interoperable, and Reusable for humans and computers—facilitate research across multiple resources. This is particularly relevant to rare diseases, where data often are scarce and scattered. Specific research questions can be asked across FAIR rare disease registries and other FAIR resources without physically combining the data. Further, FAIR implies well-defined, transparent access conditions, which supports making sensitive data as open as possible and as closed as necessary. RESULTS: We successfully developed and implemented a process of making a rare disease registry for vascular anomalies FAIR from its conception—de novo. Here, we describe the five phases of this process in detail: (i) pre-FAIRification, (ii) facilitating FAIRification, (iii) data collection, (iv) generating FAIR data in real-time, and (v) using FAIR data. This includes the creation of an electronic case report form and a semantic data model of the elements to be collected (in this case: the “Set of Common Data Elements for Rare Disease Registration” released by the European Commission), and the technical implementation of automatic, real-time data FAIRification in an Electronic Data Capture system. Further, we describe how we contribute to the four facets of FAIR, and how our FAIRification process can be reused by other registries. CONCLUSIONS: In conclusion, a detailed de novo FAIRification process of a registry for vascular anomalies is described. To a large extent, the process may be reused by other rare disease registries, and we envision this work to be a substantial contribution to an ecosystem of FAIR rare disease resources. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13023-021-02004-y. BioMed Central 2021-09-04 /pmc/articles/PMC8418729/ /pubmed/34481493 http://dx.doi.org/10.1186/s13023-021-02004-y Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Groenen, Karlijn H. J. Jacobsen, Annika Kersloot, Martijn G. dos Santos Vieira, Bruna van Enckevort, Esther Kaliyaperumal, Rajaram Arts, Derk L. ‘t Hoen, Peter A. C. Cornet, Ronald Roos, Marco Kool, Leo Schultze The de novo FAIRification process of a registry for vascular anomalies |
title | The de novo FAIRification process of a registry for vascular anomalies |
title_full | The de novo FAIRification process of a registry for vascular anomalies |
title_fullStr | The de novo FAIRification process of a registry for vascular anomalies |
title_full_unstemmed | The de novo FAIRification process of a registry for vascular anomalies |
title_short | The de novo FAIRification process of a registry for vascular anomalies |
title_sort | de novo fairification process of a registry for vascular anomalies |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8418729/ https://www.ncbi.nlm.nih.gov/pubmed/34481493 http://dx.doi.org/10.1186/s13023-021-02004-y |
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