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The methods and advances of adaptive immune receptors repertoire sequencing

The adaptive immune response is a powerful tool, capable of recognizing, binding to, and neutralizing a vast number of internal and external threats via T or B lymphatic receptors with widespread sets of antigen specificities. The emergence of high-throughput sequencing technology and bioinformatics...

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Autores principales: Liu, Hongmei, Pan, Wenjing, Tang, Congli, Tang, Yujie, Wu, Haijing, Yoshimura, Akihiko, Deng, Yan, He, Nongyue, Li, Song
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Ivyspring International Publisher 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8419057/
https://www.ncbi.nlm.nih.gov/pubmed/34522220
http://dx.doi.org/10.7150/thno.61390
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author Liu, Hongmei
Pan, Wenjing
Tang, Congli
Tang, Yujie
Wu, Haijing
Yoshimura, Akihiko
Deng, Yan
He, Nongyue
Li, Song
author_facet Liu, Hongmei
Pan, Wenjing
Tang, Congli
Tang, Yujie
Wu, Haijing
Yoshimura, Akihiko
Deng, Yan
He, Nongyue
Li, Song
author_sort Liu, Hongmei
collection PubMed
description The adaptive immune response is a powerful tool, capable of recognizing, binding to, and neutralizing a vast number of internal and external threats via T or B lymphatic receptors with widespread sets of antigen specificities. The emergence of high-throughput sequencing technology and bioinformatics provides opportunities for research in the fields of life sciences and medicine. The analysis and annotation for immune repertoire data can reveal biologically meaningful information, including immune prediction, target antigens, and effective evaluation. Continuous improvements of the immunological repertoire sequencing methods and analysis tools will help to minimize the experimental and calculation errors and realize the immunological information to meet the clinical requirements. That said, the clinical application of adaptive immune repertoire sequencing requires appropriate experimental methods and standard analytical tools. At the population cell level, we can acquire the overview of cell groups, but the information about a single cell is not obtained accurately. The information that is ignored may be crucial for understanding the heterogeneity of each cell, gene expression and drug response. The combination of high-throughput sequencing and single-cell technology allows us to obtain single-cell information with low-cost and high-throughput. In this review, we summarized the current methods and progress in this area.
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spelling pubmed-84190572021-09-13 The methods and advances of adaptive immune receptors repertoire sequencing Liu, Hongmei Pan, Wenjing Tang, Congli Tang, Yujie Wu, Haijing Yoshimura, Akihiko Deng, Yan He, Nongyue Li, Song Theranostics Research Paper The adaptive immune response is a powerful tool, capable of recognizing, binding to, and neutralizing a vast number of internal and external threats via T or B lymphatic receptors with widespread sets of antigen specificities. The emergence of high-throughput sequencing technology and bioinformatics provides opportunities for research in the fields of life sciences and medicine. The analysis and annotation for immune repertoire data can reveal biologically meaningful information, including immune prediction, target antigens, and effective evaluation. Continuous improvements of the immunological repertoire sequencing methods and analysis tools will help to minimize the experimental and calculation errors and realize the immunological information to meet the clinical requirements. That said, the clinical application of adaptive immune repertoire sequencing requires appropriate experimental methods and standard analytical tools. At the population cell level, we can acquire the overview of cell groups, but the information about a single cell is not obtained accurately. The information that is ignored may be crucial for understanding the heterogeneity of each cell, gene expression and drug response. The combination of high-throughput sequencing and single-cell technology allows us to obtain single-cell information with low-cost and high-throughput. In this review, we summarized the current methods and progress in this area. Ivyspring International Publisher 2021-08-19 /pmc/articles/PMC8419057/ /pubmed/34522220 http://dx.doi.org/10.7150/thno.61390 Text en © The author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/). See http://ivyspring.com/terms for full terms and conditions.
spellingShingle Research Paper
Liu, Hongmei
Pan, Wenjing
Tang, Congli
Tang, Yujie
Wu, Haijing
Yoshimura, Akihiko
Deng, Yan
He, Nongyue
Li, Song
The methods and advances of adaptive immune receptors repertoire sequencing
title The methods and advances of adaptive immune receptors repertoire sequencing
title_full The methods and advances of adaptive immune receptors repertoire sequencing
title_fullStr The methods and advances of adaptive immune receptors repertoire sequencing
title_full_unstemmed The methods and advances of adaptive immune receptors repertoire sequencing
title_short The methods and advances of adaptive immune receptors repertoire sequencing
title_sort methods and advances of adaptive immune receptors repertoire sequencing
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8419057/
https://www.ncbi.nlm.nih.gov/pubmed/34522220
http://dx.doi.org/10.7150/thno.61390
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