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Prognostic signature and immune efficacy of m(1)A‐, m(5)C‐ and m(6)A‐related regulators in cutaneous melanoma

Cutaneous melanoma (CM) is an aggressive cancer; given that initial and specific signs are lacking, diagnosis is often late and the prognosis is poor. RNA modification has been widely studied in tumour progression. Nevertheless, little progress has been made in the signature of N(1)‐methyladenosine...

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Autores principales: Wu, Xian rui, Chen, Zheng, Liu, Yang, Chen, Zi zi, Tang, Fengjie, Chen, Zhi zhao, Li, Jing jing, Liao, Jun lin, Cao, Ke, Chen, Xiang, Zhou, Jianda
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8419166/
https://www.ncbi.nlm.nih.gov/pubmed/34288419
http://dx.doi.org/10.1111/jcmm.16800
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author Wu, Xian rui
Chen, Zheng
Liu, Yang
Chen, Zi zi
Tang, Fengjie
Chen, Zhi zhao
Li, Jing jing
Liao, Jun lin
Cao, Ke
Chen, Xiang
Zhou, Jianda
author_facet Wu, Xian rui
Chen, Zheng
Liu, Yang
Chen, Zi zi
Tang, Fengjie
Chen, Zhi zhao
Li, Jing jing
Liao, Jun lin
Cao, Ke
Chen, Xiang
Zhou, Jianda
author_sort Wu, Xian rui
collection PubMed
description Cutaneous melanoma (CM) is an aggressive cancer; given that initial and specific signs are lacking, diagnosis is often late and the prognosis is poor. RNA modification has been widely studied in tumour progression. Nevertheless, little progress has been made in the signature of N(1)‐methyladenosine (m(1)A), 5‐methylcytosine (m(5)C), N(6)‐methyladenosine (m(6)A)‐related regulators and the tumour microenvironment (TME) cell infiltration in CM. Our study identified the characteristics of m(1)A‐, m(5)C‐ and m(6)A‐related regulators based on 468 CM samples from the public database. Using univariate, multivariate and LASSO Cox regression analysis, a risk model of regulators was established and validated by a nomogram on independent prognostic factors. The gene set variation analysis (GSVA) and the Kyoto Encyclopedia of Genes and Genomes (KEGG) clarified the involved functional pathways. A combined single‐sample gene set enrichment analysis (ssGSEA) and CIBERSORT approach revealed TME of regulator‐related prognostic signature. The nine‐gene signature stratified the patients into distinct risk subgroups for personalized prognostic assessment. Additionally, functional enrichment, immune infiltration and immunotherapy response analysis indicated that the high‐risk group was correlated with T‐cell suppression, while the low‐risk group was more sensitive to immunotherapy. The findings presented here contribute to our understanding of the TME molecular heterogeneity in CM. Nine m(1)A‐, m(5)C‐ and m(6)A‐related regulators may also be promising biomarkers for future research.
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spelling pubmed-84191662021-09-08 Prognostic signature and immune efficacy of m(1)A‐, m(5)C‐ and m(6)A‐related regulators in cutaneous melanoma Wu, Xian rui Chen, Zheng Liu, Yang Chen, Zi zi Tang, Fengjie Chen, Zhi zhao Li, Jing jing Liao, Jun lin Cao, Ke Chen, Xiang Zhou, Jianda J Cell Mol Med Original Articles Cutaneous melanoma (CM) is an aggressive cancer; given that initial and specific signs are lacking, diagnosis is often late and the prognosis is poor. RNA modification has been widely studied in tumour progression. Nevertheless, little progress has been made in the signature of N(1)‐methyladenosine (m(1)A), 5‐methylcytosine (m(5)C), N(6)‐methyladenosine (m(6)A)‐related regulators and the tumour microenvironment (TME) cell infiltration in CM. Our study identified the characteristics of m(1)A‐, m(5)C‐ and m(6)A‐related regulators based on 468 CM samples from the public database. Using univariate, multivariate and LASSO Cox regression analysis, a risk model of regulators was established and validated by a nomogram on independent prognostic factors. The gene set variation analysis (GSVA) and the Kyoto Encyclopedia of Genes and Genomes (KEGG) clarified the involved functional pathways. A combined single‐sample gene set enrichment analysis (ssGSEA) and CIBERSORT approach revealed TME of regulator‐related prognostic signature. The nine‐gene signature stratified the patients into distinct risk subgroups for personalized prognostic assessment. Additionally, functional enrichment, immune infiltration and immunotherapy response analysis indicated that the high‐risk group was correlated with T‐cell suppression, while the low‐risk group was more sensitive to immunotherapy. The findings presented here contribute to our understanding of the TME molecular heterogeneity in CM. Nine m(1)A‐, m(5)C‐ and m(6)A‐related regulators may also be promising biomarkers for future research. John Wiley and Sons Inc. 2021-07-21 2021-09 /pmc/articles/PMC8419166/ /pubmed/34288419 http://dx.doi.org/10.1111/jcmm.16800 Text en © 2021 The Authors. Journal of Cellular and Molecular Medicine published by Foundation for Cellular and Molecular Medicine and John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Wu, Xian rui
Chen, Zheng
Liu, Yang
Chen, Zi zi
Tang, Fengjie
Chen, Zhi zhao
Li, Jing jing
Liao, Jun lin
Cao, Ke
Chen, Xiang
Zhou, Jianda
Prognostic signature and immune efficacy of m(1)A‐, m(5)C‐ and m(6)A‐related regulators in cutaneous melanoma
title Prognostic signature and immune efficacy of m(1)A‐, m(5)C‐ and m(6)A‐related regulators in cutaneous melanoma
title_full Prognostic signature and immune efficacy of m(1)A‐, m(5)C‐ and m(6)A‐related regulators in cutaneous melanoma
title_fullStr Prognostic signature and immune efficacy of m(1)A‐, m(5)C‐ and m(6)A‐related regulators in cutaneous melanoma
title_full_unstemmed Prognostic signature and immune efficacy of m(1)A‐, m(5)C‐ and m(6)A‐related regulators in cutaneous melanoma
title_short Prognostic signature and immune efficacy of m(1)A‐, m(5)C‐ and m(6)A‐related regulators in cutaneous melanoma
title_sort prognostic signature and immune efficacy of m(1)a‐, m(5)c‐ and m(6)a‐related regulators in cutaneous melanoma
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8419166/
https://www.ncbi.nlm.nih.gov/pubmed/34288419
http://dx.doi.org/10.1111/jcmm.16800
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