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On Topological Analysis of fs-LIMS Data. Implications for in Situ Planetary Mass Spectrometry
In this contribution, we present results of non-linear dimensionality reduction and classification of the fs laser ablation ionization mass spectrometry (LIMS) imaging dataset acquired from the Precambrian Gunflint chert (1.88 Ga) using a miniature time-of-flight mass spectrometer developed for in s...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8419467/ https://www.ncbi.nlm.nih.gov/pubmed/34497998 http://dx.doi.org/10.3389/frai.2021.668163 |
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author | Lukmanov, Rustam A. Riedo, Andreas Wacey, David Ligterink, Niels F. W. Grimaudo, Valentine Tulej, Marek de Koning, Coenraad Neubeck, Anna Wurz, Peter |
author_facet | Lukmanov, Rustam A. Riedo, Andreas Wacey, David Ligterink, Niels F. W. Grimaudo, Valentine Tulej, Marek de Koning, Coenraad Neubeck, Anna Wurz, Peter |
author_sort | Lukmanov, Rustam A. |
collection | PubMed |
description | In this contribution, we present results of non-linear dimensionality reduction and classification of the fs laser ablation ionization mass spectrometry (LIMS) imaging dataset acquired from the Precambrian Gunflint chert (1.88 Ga) using a miniature time-of-flight mass spectrometer developed for in situ space applications. We discuss the data generation, processing, and analysis pipeline for the classification of the recorded fs-LIMS mass spectra. Further, we define topological biosignatures identified for Precambrian Gunflint microfossils by projecting the recorded fs-LIMS intensity space into low dimensions. Two distinct subtypes of microfossil-related spectra, a layer of organic contamination and inorganic quartz matrix were identified using the fs-LIMS data. The topological analysis applied to the fs-LIMS data allows to gain additional knowledge from large datasets, formulate hypotheses and quickly generate insights from spectral data. Our contribution illustrates the utility of applying spatially resolved mass spectrometry in combination with topology-based analytics in detecting signatures of early (primitive) life. Our results indicate that fs-LIMS, in combination with topological methods, provides a powerful analytical framework and could be applied to the study of other complex mineralogical samples. |
format | Online Article Text |
id | pubmed-8419467 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-84194672021-09-07 On Topological Analysis of fs-LIMS Data. Implications for in Situ Planetary Mass Spectrometry Lukmanov, Rustam A. Riedo, Andreas Wacey, David Ligterink, Niels F. W. Grimaudo, Valentine Tulej, Marek de Koning, Coenraad Neubeck, Anna Wurz, Peter Front Artif Intell Artificial Intelligence In this contribution, we present results of non-linear dimensionality reduction and classification of the fs laser ablation ionization mass spectrometry (LIMS) imaging dataset acquired from the Precambrian Gunflint chert (1.88 Ga) using a miniature time-of-flight mass spectrometer developed for in situ space applications. We discuss the data generation, processing, and analysis pipeline for the classification of the recorded fs-LIMS mass spectra. Further, we define topological biosignatures identified for Precambrian Gunflint microfossils by projecting the recorded fs-LIMS intensity space into low dimensions. Two distinct subtypes of microfossil-related spectra, a layer of organic contamination and inorganic quartz matrix were identified using the fs-LIMS data. The topological analysis applied to the fs-LIMS data allows to gain additional knowledge from large datasets, formulate hypotheses and quickly generate insights from spectral data. Our contribution illustrates the utility of applying spatially resolved mass spectrometry in combination with topology-based analytics in detecting signatures of early (primitive) life. Our results indicate that fs-LIMS, in combination with topological methods, provides a powerful analytical framework and could be applied to the study of other complex mineralogical samples. Frontiers Media S.A. 2021-08-23 /pmc/articles/PMC8419467/ /pubmed/34497998 http://dx.doi.org/10.3389/frai.2021.668163 Text en Copyright © 2021 Lukmanov, Riedo, Wacey, Ligterink, Grimaudo, Tulej, de Koning, Neubeck and Wurz. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Artificial Intelligence Lukmanov, Rustam A. Riedo, Andreas Wacey, David Ligterink, Niels F. W. Grimaudo, Valentine Tulej, Marek de Koning, Coenraad Neubeck, Anna Wurz, Peter On Topological Analysis of fs-LIMS Data. Implications for in Situ Planetary Mass Spectrometry |
title | On Topological Analysis of fs-LIMS Data. Implications for in Situ Planetary Mass Spectrometry |
title_full | On Topological Analysis of fs-LIMS Data. Implications for in Situ Planetary Mass Spectrometry |
title_fullStr | On Topological Analysis of fs-LIMS Data. Implications for in Situ Planetary Mass Spectrometry |
title_full_unstemmed | On Topological Analysis of fs-LIMS Data. Implications for in Situ Planetary Mass Spectrometry |
title_short | On Topological Analysis of fs-LIMS Data. Implications for in Situ Planetary Mass Spectrometry |
title_sort | on topological analysis of fs-lims data. implications for in situ planetary mass spectrometry |
topic | Artificial Intelligence |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8419467/ https://www.ncbi.nlm.nih.gov/pubmed/34497998 http://dx.doi.org/10.3389/frai.2021.668163 |
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