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On Topological Analysis of fs-LIMS Data. Implications for in Situ Planetary Mass Spectrometry

In this contribution, we present results of non-linear dimensionality reduction and classification of the fs laser ablation ionization mass spectrometry (LIMS) imaging dataset acquired from the Precambrian Gunflint chert (1.88 Ga) using a miniature time-of-flight mass spectrometer developed for in s...

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Autores principales: Lukmanov, Rustam A., Riedo, Andreas, Wacey, David, Ligterink, Niels F. W., Grimaudo, Valentine, Tulej, Marek, de Koning, Coenraad, Neubeck, Anna, Wurz, Peter
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8419467/
https://www.ncbi.nlm.nih.gov/pubmed/34497998
http://dx.doi.org/10.3389/frai.2021.668163
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author Lukmanov, Rustam A.
Riedo, Andreas
Wacey, David
Ligterink, Niels F. W.
Grimaudo, Valentine
Tulej, Marek
de Koning, Coenraad
Neubeck, Anna
Wurz, Peter
author_facet Lukmanov, Rustam A.
Riedo, Andreas
Wacey, David
Ligterink, Niels F. W.
Grimaudo, Valentine
Tulej, Marek
de Koning, Coenraad
Neubeck, Anna
Wurz, Peter
author_sort Lukmanov, Rustam A.
collection PubMed
description In this contribution, we present results of non-linear dimensionality reduction and classification of the fs laser ablation ionization mass spectrometry (LIMS) imaging dataset acquired from the Precambrian Gunflint chert (1.88 Ga) using a miniature time-of-flight mass spectrometer developed for in situ space applications. We discuss the data generation, processing, and analysis pipeline for the classification of the recorded fs-LIMS mass spectra. Further, we define topological biosignatures identified for Precambrian Gunflint microfossils by projecting the recorded fs-LIMS intensity space into low dimensions. Two distinct subtypes of microfossil-related spectra, a layer of organic contamination and inorganic quartz matrix were identified using the fs-LIMS data. The topological analysis applied to the fs-LIMS data allows to gain additional knowledge from large datasets, formulate hypotheses and quickly generate insights from spectral data. Our contribution illustrates the utility of applying spatially resolved mass spectrometry in combination with topology-based analytics in detecting signatures of early (primitive) life. Our results indicate that fs-LIMS, in combination with topological methods, provides a powerful analytical framework and could be applied to the study of other complex mineralogical samples.
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spelling pubmed-84194672021-09-07 On Topological Analysis of fs-LIMS Data. Implications for in Situ Planetary Mass Spectrometry Lukmanov, Rustam A. Riedo, Andreas Wacey, David Ligterink, Niels F. W. Grimaudo, Valentine Tulej, Marek de Koning, Coenraad Neubeck, Anna Wurz, Peter Front Artif Intell Artificial Intelligence In this contribution, we present results of non-linear dimensionality reduction and classification of the fs laser ablation ionization mass spectrometry (LIMS) imaging dataset acquired from the Precambrian Gunflint chert (1.88 Ga) using a miniature time-of-flight mass spectrometer developed for in situ space applications. We discuss the data generation, processing, and analysis pipeline for the classification of the recorded fs-LIMS mass spectra. Further, we define topological biosignatures identified for Precambrian Gunflint microfossils by projecting the recorded fs-LIMS intensity space into low dimensions. Two distinct subtypes of microfossil-related spectra, a layer of organic contamination and inorganic quartz matrix were identified using the fs-LIMS data. The topological analysis applied to the fs-LIMS data allows to gain additional knowledge from large datasets, formulate hypotheses and quickly generate insights from spectral data. Our contribution illustrates the utility of applying spatially resolved mass spectrometry in combination with topology-based analytics in detecting signatures of early (primitive) life. Our results indicate that fs-LIMS, in combination with topological methods, provides a powerful analytical framework and could be applied to the study of other complex mineralogical samples. Frontiers Media S.A. 2021-08-23 /pmc/articles/PMC8419467/ /pubmed/34497998 http://dx.doi.org/10.3389/frai.2021.668163 Text en Copyright © 2021 Lukmanov, Riedo, Wacey, Ligterink, Grimaudo, Tulej, de Koning, Neubeck and Wurz. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Artificial Intelligence
Lukmanov, Rustam A.
Riedo, Andreas
Wacey, David
Ligterink, Niels F. W.
Grimaudo, Valentine
Tulej, Marek
de Koning, Coenraad
Neubeck, Anna
Wurz, Peter
On Topological Analysis of fs-LIMS Data. Implications for in Situ Planetary Mass Spectrometry
title On Topological Analysis of fs-LIMS Data. Implications for in Situ Planetary Mass Spectrometry
title_full On Topological Analysis of fs-LIMS Data. Implications for in Situ Planetary Mass Spectrometry
title_fullStr On Topological Analysis of fs-LIMS Data. Implications for in Situ Planetary Mass Spectrometry
title_full_unstemmed On Topological Analysis of fs-LIMS Data. Implications for in Situ Planetary Mass Spectrometry
title_short On Topological Analysis of fs-LIMS Data. Implications for in Situ Planetary Mass Spectrometry
title_sort on topological analysis of fs-lims data. implications for in situ planetary mass spectrometry
topic Artificial Intelligence
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8419467/
https://www.ncbi.nlm.nih.gov/pubmed/34497998
http://dx.doi.org/10.3389/frai.2021.668163
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