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A microRNA‐clinical prognosis model to predict the overall survival for kidney renal clear cell carcinoma

Numerous studies have shown that microRNA (miRNA) serves as key regulatory factors in the origin and development of cancers. However, the biological mechanisms of miRNAs in kidney renal clear cell carcinoma (KIRC) are still unknown. It is necessary to construct an effective miRNA‐clinical model to p...

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Autores principales: Zhan, Yating, Zhang, Rongrong, Li, Chunxue, Xu, Xuantong, Zhu, Kai, Yang, Zhan, Zheng, Jianjian, Guo, Yong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8419758/
https://www.ncbi.nlm.nih.gov/pubmed/34288551
http://dx.doi.org/10.1002/cam4.4148
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author Zhan, Yating
Zhang, Rongrong
Li, Chunxue
Xu, Xuantong
Zhu, Kai
Yang, Zhan
Zheng, Jianjian
Guo, Yong
author_facet Zhan, Yating
Zhang, Rongrong
Li, Chunxue
Xu, Xuantong
Zhu, Kai
Yang, Zhan
Zheng, Jianjian
Guo, Yong
author_sort Zhan, Yating
collection PubMed
description Numerous studies have shown that microRNA (miRNA) serves as key regulatory factors in the origin and development of cancers. However, the biological mechanisms of miRNAs in kidney renal clear cell carcinoma (KIRC) are still unknown. It is necessary to construct an effective miRNA‐clinical model to predict the prognosis of KIRC. In this study, 94 differentially expressed miRNAs were found between para‐tumor and tumor tissues based on the Cancer Genome Atlas (TCGA) database. Seven miRNAs (hsa‐miR‐21‐5p, hsa‐miR‐3613‐5p, hsa‐miR‐144‐5p, hsa‐miR‐376a‐5p, hsa‐miR‐5588‐3p, hsa‐miR‐1269a, and hsa‐miR‐137‐3p) were selected as prognostic indicators. According to their cox coefficient, a risk score formula was constructed. Patients with risk scores were divided into high‐ and low‐risk groups based on the median score. Kaplan–Meier curves analysis showed that the low‐risk group had a better survival probability compared to the high‐risk group. The area under the ROC curve (AUC) value of the miRNA model was 0.744. In comparison with clinical features, the miRNA model risk score was considered as an independent prognosis factor in multivariate Cox regression analysis. In addition, we built a nomogram including age, metastasis, and miRNA prognostic model based on the results of multivariate Cox regression analysis. The decision curve analysis (DCA) revealed the clinical net benefit of the prognostic model. Gene set enrichment analysis (GSEA) results suggested that several important pathways may be the potential pathways for KIRC. The results of Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis for the target genes of 7 miRNAs revealed that miRNAs may participate in KIRC progression via many specific pathways. Additionally, the levels of seven prognostic miRNAs showed a significant difference between KIRC tissues and adjacent non‐tumorous tissues. In conclusion, the miRNA‐clinical model provides an effective and accurate way to predict the prognosis of KIRC.
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spelling pubmed-84197582021-09-08 A microRNA‐clinical prognosis model to predict the overall survival for kidney renal clear cell carcinoma Zhan, Yating Zhang, Rongrong Li, Chunxue Xu, Xuantong Zhu, Kai Yang, Zhan Zheng, Jianjian Guo, Yong Cancer Med Bioinformatics Numerous studies have shown that microRNA (miRNA) serves as key regulatory factors in the origin and development of cancers. However, the biological mechanisms of miRNAs in kidney renal clear cell carcinoma (KIRC) are still unknown. It is necessary to construct an effective miRNA‐clinical model to predict the prognosis of KIRC. In this study, 94 differentially expressed miRNAs were found between para‐tumor and tumor tissues based on the Cancer Genome Atlas (TCGA) database. Seven miRNAs (hsa‐miR‐21‐5p, hsa‐miR‐3613‐5p, hsa‐miR‐144‐5p, hsa‐miR‐376a‐5p, hsa‐miR‐5588‐3p, hsa‐miR‐1269a, and hsa‐miR‐137‐3p) were selected as prognostic indicators. According to their cox coefficient, a risk score formula was constructed. Patients with risk scores were divided into high‐ and low‐risk groups based on the median score. Kaplan–Meier curves analysis showed that the low‐risk group had a better survival probability compared to the high‐risk group. The area under the ROC curve (AUC) value of the miRNA model was 0.744. In comparison with clinical features, the miRNA model risk score was considered as an independent prognosis factor in multivariate Cox regression analysis. In addition, we built a nomogram including age, metastasis, and miRNA prognostic model based on the results of multivariate Cox regression analysis. The decision curve analysis (DCA) revealed the clinical net benefit of the prognostic model. Gene set enrichment analysis (GSEA) results suggested that several important pathways may be the potential pathways for KIRC. The results of Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis for the target genes of 7 miRNAs revealed that miRNAs may participate in KIRC progression via many specific pathways. Additionally, the levels of seven prognostic miRNAs showed a significant difference between KIRC tissues and adjacent non‐tumorous tissues. In conclusion, the miRNA‐clinical model provides an effective and accurate way to predict the prognosis of KIRC. John Wiley and Sons Inc. 2021-07-21 /pmc/articles/PMC8419758/ /pubmed/34288551 http://dx.doi.org/10.1002/cam4.4148 Text en © 2021 The Authors. Cancer Medicine published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Bioinformatics
Zhan, Yating
Zhang, Rongrong
Li, Chunxue
Xu, Xuantong
Zhu, Kai
Yang, Zhan
Zheng, Jianjian
Guo, Yong
A microRNA‐clinical prognosis model to predict the overall survival for kidney renal clear cell carcinoma
title A microRNA‐clinical prognosis model to predict the overall survival for kidney renal clear cell carcinoma
title_full A microRNA‐clinical prognosis model to predict the overall survival for kidney renal clear cell carcinoma
title_fullStr A microRNA‐clinical prognosis model to predict the overall survival for kidney renal clear cell carcinoma
title_full_unstemmed A microRNA‐clinical prognosis model to predict the overall survival for kidney renal clear cell carcinoma
title_short A microRNA‐clinical prognosis model to predict the overall survival for kidney renal clear cell carcinoma
title_sort microrna‐clinical prognosis model to predict the overall survival for kidney renal clear cell carcinoma
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8419758/
https://www.ncbi.nlm.nih.gov/pubmed/34288551
http://dx.doi.org/10.1002/cam4.4148
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