Cargando…
A microRNA‐clinical prognosis model to predict the overall survival for kidney renal clear cell carcinoma
Numerous studies have shown that microRNA (miRNA) serves as key regulatory factors in the origin and development of cancers. However, the biological mechanisms of miRNAs in kidney renal clear cell carcinoma (KIRC) are still unknown. It is necessary to construct an effective miRNA‐clinical model to p...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8419758/ https://www.ncbi.nlm.nih.gov/pubmed/34288551 http://dx.doi.org/10.1002/cam4.4148 |
_version_ | 1783748818068570112 |
---|---|
author | Zhan, Yating Zhang, Rongrong Li, Chunxue Xu, Xuantong Zhu, Kai Yang, Zhan Zheng, Jianjian Guo, Yong |
author_facet | Zhan, Yating Zhang, Rongrong Li, Chunxue Xu, Xuantong Zhu, Kai Yang, Zhan Zheng, Jianjian Guo, Yong |
author_sort | Zhan, Yating |
collection | PubMed |
description | Numerous studies have shown that microRNA (miRNA) serves as key regulatory factors in the origin and development of cancers. However, the biological mechanisms of miRNAs in kidney renal clear cell carcinoma (KIRC) are still unknown. It is necessary to construct an effective miRNA‐clinical model to predict the prognosis of KIRC. In this study, 94 differentially expressed miRNAs were found between para‐tumor and tumor tissues based on the Cancer Genome Atlas (TCGA) database. Seven miRNAs (hsa‐miR‐21‐5p, hsa‐miR‐3613‐5p, hsa‐miR‐144‐5p, hsa‐miR‐376a‐5p, hsa‐miR‐5588‐3p, hsa‐miR‐1269a, and hsa‐miR‐137‐3p) were selected as prognostic indicators. According to their cox coefficient, a risk score formula was constructed. Patients with risk scores were divided into high‐ and low‐risk groups based on the median score. Kaplan–Meier curves analysis showed that the low‐risk group had a better survival probability compared to the high‐risk group. The area under the ROC curve (AUC) value of the miRNA model was 0.744. In comparison with clinical features, the miRNA model risk score was considered as an independent prognosis factor in multivariate Cox regression analysis. In addition, we built a nomogram including age, metastasis, and miRNA prognostic model based on the results of multivariate Cox regression analysis. The decision curve analysis (DCA) revealed the clinical net benefit of the prognostic model. Gene set enrichment analysis (GSEA) results suggested that several important pathways may be the potential pathways for KIRC. The results of Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis for the target genes of 7 miRNAs revealed that miRNAs may participate in KIRC progression via many specific pathways. Additionally, the levels of seven prognostic miRNAs showed a significant difference between KIRC tissues and adjacent non‐tumorous tissues. In conclusion, the miRNA‐clinical model provides an effective and accurate way to predict the prognosis of KIRC. |
format | Online Article Text |
id | pubmed-8419758 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-84197582021-09-08 A microRNA‐clinical prognosis model to predict the overall survival for kidney renal clear cell carcinoma Zhan, Yating Zhang, Rongrong Li, Chunxue Xu, Xuantong Zhu, Kai Yang, Zhan Zheng, Jianjian Guo, Yong Cancer Med Bioinformatics Numerous studies have shown that microRNA (miRNA) serves as key regulatory factors in the origin and development of cancers. However, the biological mechanisms of miRNAs in kidney renal clear cell carcinoma (KIRC) are still unknown. It is necessary to construct an effective miRNA‐clinical model to predict the prognosis of KIRC. In this study, 94 differentially expressed miRNAs were found between para‐tumor and tumor tissues based on the Cancer Genome Atlas (TCGA) database. Seven miRNAs (hsa‐miR‐21‐5p, hsa‐miR‐3613‐5p, hsa‐miR‐144‐5p, hsa‐miR‐376a‐5p, hsa‐miR‐5588‐3p, hsa‐miR‐1269a, and hsa‐miR‐137‐3p) were selected as prognostic indicators. According to their cox coefficient, a risk score formula was constructed. Patients with risk scores were divided into high‐ and low‐risk groups based on the median score. Kaplan–Meier curves analysis showed that the low‐risk group had a better survival probability compared to the high‐risk group. The area under the ROC curve (AUC) value of the miRNA model was 0.744. In comparison with clinical features, the miRNA model risk score was considered as an independent prognosis factor in multivariate Cox regression analysis. In addition, we built a nomogram including age, metastasis, and miRNA prognostic model based on the results of multivariate Cox regression analysis. The decision curve analysis (DCA) revealed the clinical net benefit of the prognostic model. Gene set enrichment analysis (GSEA) results suggested that several important pathways may be the potential pathways for KIRC. The results of Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis for the target genes of 7 miRNAs revealed that miRNAs may participate in KIRC progression via many specific pathways. Additionally, the levels of seven prognostic miRNAs showed a significant difference between KIRC tissues and adjacent non‐tumorous tissues. In conclusion, the miRNA‐clinical model provides an effective and accurate way to predict the prognosis of KIRC. John Wiley and Sons Inc. 2021-07-21 /pmc/articles/PMC8419758/ /pubmed/34288551 http://dx.doi.org/10.1002/cam4.4148 Text en © 2021 The Authors. Cancer Medicine published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Bioinformatics Zhan, Yating Zhang, Rongrong Li, Chunxue Xu, Xuantong Zhu, Kai Yang, Zhan Zheng, Jianjian Guo, Yong A microRNA‐clinical prognosis model to predict the overall survival for kidney renal clear cell carcinoma |
title | A microRNA‐clinical prognosis model to predict the overall survival for kidney renal clear cell carcinoma |
title_full | A microRNA‐clinical prognosis model to predict the overall survival for kidney renal clear cell carcinoma |
title_fullStr | A microRNA‐clinical prognosis model to predict the overall survival for kidney renal clear cell carcinoma |
title_full_unstemmed | A microRNA‐clinical prognosis model to predict the overall survival for kidney renal clear cell carcinoma |
title_short | A microRNA‐clinical prognosis model to predict the overall survival for kidney renal clear cell carcinoma |
title_sort | microrna‐clinical prognosis model to predict the overall survival for kidney renal clear cell carcinoma |
topic | Bioinformatics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8419758/ https://www.ncbi.nlm.nih.gov/pubmed/34288551 http://dx.doi.org/10.1002/cam4.4148 |
work_keys_str_mv | AT zhanyating amicrornaclinicalprognosismodeltopredicttheoverallsurvivalforkidneyrenalclearcellcarcinoma AT zhangrongrong amicrornaclinicalprognosismodeltopredicttheoverallsurvivalforkidneyrenalclearcellcarcinoma AT lichunxue amicrornaclinicalprognosismodeltopredicttheoverallsurvivalforkidneyrenalclearcellcarcinoma AT xuxuantong amicrornaclinicalprognosismodeltopredicttheoverallsurvivalforkidneyrenalclearcellcarcinoma AT zhukai amicrornaclinicalprognosismodeltopredicttheoverallsurvivalforkidneyrenalclearcellcarcinoma AT yangzhan amicrornaclinicalprognosismodeltopredicttheoverallsurvivalforkidneyrenalclearcellcarcinoma AT zhengjianjian amicrornaclinicalprognosismodeltopredicttheoverallsurvivalforkidneyrenalclearcellcarcinoma AT guoyong amicrornaclinicalprognosismodeltopredicttheoverallsurvivalforkidneyrenalclearcellcarcinoma AT zhanyating micrornaclinicalprognosismodeltopredicttheoverallsurvivalforkidneyrenalclearcellcarcinoma AT zhangrongrong micrornaclinicalprognosismodeltopredicttheoverallsurvivalforkidneyrenalclearcellcarcinoma AT lichunxue micrornaclinicalprognosismodeltopredicttheoverallsurvivalforkidneyrenalclearcellcarcinoma AT xuxuantong micrornaclinicalprognosismodeltopredicttheoverallsurvivalforkidneyrenalclearcellcarcinoma AT zhukai micrornaclinicalprognosismodeltopredicttheoverallsurvivalforkidneyrenalclearcellcarcinoma AT yangzhan micrornaclinicalprognosismodeltopredicttheoverallsurvivalforkidneyrenalclearcellcarcinoma AT zhengjianjian micrornaclinicalprognosismodeltopredicttheoverallsurvivalforkidneyrenalclearcellcarcinoma AT guoyong micrornaclinicalprognosismodeltopredicttheoverallsurvivalforkidneyrenalclearcellcarcinoma |