_version_ 1783748835632218112
author Ntie-Kang, Fidele
Telukunta, Kiran K.
Fobofou, Serge A. T.
Chukwudi Osamor, Victor
Egieyeh, Samuel A.
Valli, Marilia
Djoumbou-Feunang, Yannick
Sorokina, Maria
Stork, Conrad
Mathai, Neann
Zierep, Paul
Chávez-Hernández, Ana L.
Duran-Frigola, Miquel
Babiaka, Smith B.
Tematio Fouedjou, Romuald
Eni, Donatus B.
Akame, Simeon
Arreyetta-Bawak, Augustine B.
Ebob, Oyere T.
Metuge, Jonathan A.
Bekono, Boris D.
Isa, Mustafa A.
Onuku, Raphael
Shadrack, Daniel M.
Musyoka, Thommas M.
Patil, Vaishali M.
van der Hooft, Justin J. J.
da Silva Bolzani, Vanderlan
Medina-Franco, José L.
Kirchmair, Johannes
Weber, Tilmann
Tastan Bishop, Özlem
Medema, Marnix H.
Wessjohann, Ludger A.
Ludwig-Müller, Jutta
author_facet Ntie-Kang, Fidele
Telukunta, Kiran K.
Fobofou, Serge A. T.
Chukwudi Osamor, Victor
Egieyeh, Samuel A.
Valli, Marilia
Djoumbou-Feunang, Yannick
Sorokina, Maria
Stork, Conrad
Mathai, Neann
Zierep, Paul
Chávez-Hernández, Ana L.
Duran-Frigola, Miquel
Babiaka, Smith B.
Tematio Fouedjou, Romuald
Eni, Donatus B.
Akame, Simeon
Arreyetta-Bawak, Augustine B.
Ebob, Oyere T.
Metuge, Jonathan A.
Bekono, Boris D.
Isa, Mustafa A.
Onuku, Raphael
Shadrack, Daniel M.
Musyoka, Thommas M.
Patil, Vaishali M.
van der Hooft, Justin J. J.
da Silva Bolzani, Vanderlan
Medina-Franco, José L.
Kirchmair, Johannes
Weber, Tilmann
Tastan Bishop, Özlem
Medema, Marnix H.
Wessjohann, Ludger A.
Ludwig-Müller, Jutta
author_sort Ntie-Kang, Fidele
collection PubMed
description We report the major conclusions of the online open-access workshop “Computational Applications in Secondary Metabolite Discovery (CAiSMD)” that took place from 08 to 10 March 2021. Invited speakers from academia and industry and about 200 registered participants from five continents (Africa, Asia, Europe, South America, and North America) took part in the workshop. The workshop highlighted the potential applications of computational methodologies in the search for secondary metabolites (SMs) or natural products (NPs) as potential drugs and drug leads. During 3 days, the participants of this online workshop received an overview of modern computer-based approaches for exploring NP discovery in the “omics” age. The invited experts gave keynote lectures, trained participants in hands-on sessions, and held round table discussions. This was followed by oral presentations with much interaction between the speakers and the audience. Selected applicants (early-career scientists) were offered the opportunity to give oral presentations (15 min) and present posters in the form of flash presentations (5 min) upon submission of an abstract. The final program available on the workshop website (https://caismd.indiayouth.info/) comprised of 4 keynote lectures (KLs), 12 oral presentations (OPs), 2 round table discussions (RTDs), and 5 hands-on sessions (HSs). This meeting report also references internet resources for computational biology in the area of secondary metabolites that are of use outside of the workshop areas and will constitute a long-term valuable source for the community. The workshop concluded with an online survey form to be completed by speakers and participants for the goal of improving any subsequent editions. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13321-021-00546-8.
format Online
Article
Text
id pubmed-8419829
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Springer International Publishing
record_format MEDLINE/PubMed
spelling pubmed-84198292021-09-07 Computational Applications in Secondary Metabolite Discovery (CAiSMD): an online workshop Ntie-Kang, Fidele Telukunta, Kiran K. Fobofou, Serge A. T. Chukwudi Osamor, Victor Egieyeh, Samuel A. Valli, Marilia Djoumbou-Feunang, Yannick Sorokina, Maria Stork, Conrad Mathai, Neann Zierep, Paul Chávez-Hernández, Ana L. Duran-Frigola, Miquel Babiaka, Smith B. Tematio Fouedjou, Romuald Eni, Donatus B. Akame, Simeon Arreyetta-Bawak, Augustine B. Ebob, Oyere T. Metuge, Jonathan A. Bekono, Boris D. Isa, Mustafa A. Onuku, Raphael Shadrack, Daniel M. Musyoka, Thommas M. Patil, Vaishali M. van der Hooft, Justin J. J. da Silva Bolzani, Vanderlan Medina-Franco, José L. Kirchmair, Johannes Weber, Tilmann Tastan Bishop, Özlem Medema, Marnix H. Wessjohann, Ludger A. Ludwig-Müller, Jutta J Cheminform Meeting Report We report the major conclusions of the online open-access workshop “Computational Applications in Secondary Metabolite Discovery (CAiSMD)” that took place from 08 to 10 March 2021. Invited speakers from academia and industry and about 200 registered participants from five continents (Africa, Asia, Europe, South America, and North America) took part in the workshop. The workshop highlighted the potential applications of computational methodologies in the search for secondary metabolites (SMs) or natural products (NPs) as potential drugs and drug leads. During 3 days, the participants of this online workshop received an overview of modern computer-based approaches for exploring NP discovery in the “omics” age. The invited experts gave keynote lectures, trained participants in hands-on sessions, and held round table discussions. This was followed by oral presentations with much interaction between the speakers and the audience. Selected applicants (early-career scientists) were offered the opportunity to give oral presentations (15 min) and present posters in the form of flash presentations (5 min) upon submission of an abstract. The final program available on the workshop website (https://caismd.indiayouth.info/) comprised of 4 keynote lectures (KLs), 12 oral presentations (OPs), 2 round table discussions (RTDs), and 5 hands-on sessions (HSs). This meeting report also references internet resources for computational biology in the area of secondary metabolites that are of use outside of the workshop areas and will constitute a long-term valuable source for the community. The workshop concluded with an online survey form to be completed by speakers and participants for the goal of improving any subsequent editions. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13321-021-00546-8. Springer International Publishing 2021-09-06 /pmc/articles/PMC8419829/ /pubmed/34488889 http://dx.doi.org/10.1186/s13321-021-00546-8 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Meeting Report
Ntie-Kang, Fidele
Telukunta, Kiran K.
Fobofou, Serge A. T.
Chukwudi Osamor, Victor
Egieyeh, Samuel A.
Valli, Marilia
Djoumbou-Feunang, Yannick
Sorokina, Maria
Stork, Conrad
Mathai, Neann
Zierep, Paul
Chávez-Hernández, Ana L.
Duran-Frigola, Miquel
Babiaka, Smith B.
Tematio Fouedjou, Romuald
Eni, Donatus B.
Akame, Simeon
Arreyetta-Bawak, Augustine B.
Ebob, Oyere T.
Metuge, Jonathan A.
Bekono, Boris D.
Isa, Mustafa A.
Onuku, Raphael
Shadrack, Daniel M.
Musyoka, Thommas M.
Patil, Vaishali M.
van der Hooft, Justin J. J.
da Silva Bolzani, Vanderlan
Medina-Franco, José L.
Kirchmair, Johannes
Weber, Tilmann
Tastan Bishop, Özlem
Medema, Marnix H.
Wessjohann, Ludger A.
Ludwig-Müller, Jutta
Computational Applications in Secondary Metabolite Discovery (CAiSMD): an online workshop
title Computational Applications in Secondary Metabolite Discovery (CAiSMD): an online workshop
title_full Computational Applications in Secondary Metabolite Discovery (CAiSMD): an online workshop
title_fullStr Computational Applications in Secondary Metabolite Discovery (CAiSMD): an online workshop
title_full_unstemmed Computational Applications in Secondary Metabolite Discovery (CAiSMD): an online workshop
title_short Computational Applications in Secondary Metabolite Discovery (CAiSMD): an online workshop
title_sort computational applications in secondary metabolite discovery (caismd): an online workshop
topic Meeting Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8419829/
https://www.ncbi.nlm.nih.gov/pubmed/34488889
http://dx.doi.org/10.1186/s13321-021-00546-8
work_keys_str_mv AT ntiekangfidele computationalapplicationsinsecondarymetabolitediscoverycaismdanonlineworkshop
AT telukuntakirank computationalapplicationsinsecondarymetabolitediscoverycaismdanonlineworkshop
AT fobofousergeat computationalapplicationsinsecondarymetabolitediscoverycaismdanonlineworkshop
AT chukwudiosamorvictor computationalapplicationsinsecondarymetabolitediscoverycaismdanonlineworkshop
AT egieyehsamuela computationalapplicationsinsecondarymetabolitediscoverycaismdanonlineworkshop
AT vallimarilia computationalapplicationsinsecondarymetabolitediscoverycaismdanonlineworkshop
AT djoumboufeunangyannick computationalapplicationsinsecondarymetabolitediscoverycaismdanonlineworkshop
AT sorokinamaria computationalapplicationsinsecondarymetabolitediscoverycaismdanonlineworkshop
AT storkconrad computationalapplicationsinsecondarymetabolitediscoverycaismdanonlineworkshop
AT mathaineann computationalapplicationsinsecondarymetabolitediscoverycaismdanonlineworkshop
AT ziereppaul computationalapplicationsinsecondarymetabolitediscoverycaismdanonlineworkshop
AT chavezhernandezanal computationalapplicationsinsecondarymetabolitediscoverycaismdanonlineworkshop
AT duranfrigolamiquel computationalapplicationsinsecondarymetabolitediscoverycaismdanonlineworkshop
AT babiakasmithb computationalapplicationsinsecondarymetabolitediscoverycaismdanonlineworkshop
AT tematiofouedjouromuald computationalapplicationsinsecondarymetabolitediscoverycaismdanonlineworkshop
AT enidonatusb computationalapplicationsinsecondarymetabolitediscoverycaismdanonlineworkshop
AT akamesimeon computationalapplicationsinsecondarymetabolitediscoverycaismdanonlineworkshop
AT arreyettabawakaugustineb computationalapplicationsinsecondarymetabolitediscoverycaismdanonlineworkshop
AT eboboyeret computationalapplicationsinsecondarymetabolitediscoverycaismdanonlineworkshop
AT metugejonathana computationalapplicationsinsecondarymetabolitediscoverycaismdanonlineworkshop
AT bekonoborisd computationalapplicationsinsecondarymetabolitediscoverycaismdanonlineworkshop
AT isamustafaa computationalapplicationsinsecondarymetabolitediscoverycaismdanonlineworkshop
AT onukuraphael computationalapplicationsinsecondarymetabolitediscoverycaismdanonlineworkshop
AT shadrackdanielm computationalapplicationsinsecondarymetabolitediscoverycaismdanonlineworkshop
AT musyokathommasm computationalapplicationsinsecondarymetabolitediscoverycaismdanonlineworkshop
AT patilvaishalim computationalapplicationsinsecondarymetabolitediscoverycaismdanonlineworkshop
AT vanderhooftjustinjj computationalapplicationsinsecondarymetabolitediscoverycaismdanonlineworkshop
AT dasilvabolzanivanderlan computationalapplicationsinsecondarymetabolitediscoverycaismdanonlineworkshop
AT medinafrancojosel computationalapplicationsinsecondarymetabolitediscoverycaismdanonlineworkshop
AT kirchmairjohannes computationalapplicationsinsecondarymetabolitediscoverycaismdanonlineworkshop
AT webertilmann computationalapplicationsinsecondarymetabolitediscoverycaismdanonlineworkshop
AT tastanbishopozlem computationalapplicationsinsecondarymetabolitediscoverycaismdanonlineworkshop
AT medemamarnixh computationalapplicationsinsecondarymetabolitediscoverycaismdanonlineworkshop
AT wessjohannludgera computationalapplicationsinsecondarymetabolitediscoverycaismdanonlineworkshop
AT ludwigmullerjutta computationalapplicationsinsecondarymetabolitediscoverycaismdanonlineworkshop