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Repurposing of gastric cancer drugs against COVID-19
Corona Virus Disease 2019 (COVID-19) caused by Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) has become a global pandemic. Additionally, the SARS-CoV-2 infection in the patients of Gastric Cancer (GC; the third leading cause of death in the world) pose a great challenge for the health...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier Ltd.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8420180/ https://www.ncbi.nlm.nih.gov/pubmed/34537409 http://dx.doi.org/10.1016/j.compbiomed.2021.104826 |
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author | Sonkar, Charu Doharey, Pawan Kumar Rathore, Anuranjan Singh Singh, Vishal Kashyap, Dharmendra Sahoo, Amaresh Kumar Mittal, Nitish Sharma, Bechan Jha, Hem Chandra |
author_facet | Sonkar, Charu Doharey, Pawan Kumar Rathore, Anuranjan Singh Singh, Vishal Kashyap, Dharmendra Sahoo, Amaresh Kumar Mittal, Nitish Sharma, Bechan Jha, Hem Chandra |
author_sort | Sonkar, Charu |
collection | PubMed |
description | Corona Virus Disease 2019 (COVID-19) caused by Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) has become a global pandemic. Additionally, the SARS-CoV-2 infection in the patients of Gastric Cancer (GC; the third leading cause of death in the world) pose a great challenge for the health management of the patients. Since there have been uncertainties to develop a new drug against COVID-19, there is an urgent need for repurposing drugs that can target key proteins of both SARS-CoV-2 and GC. The SARS-CoV-2-RdRp protein contains the NiRAN domain, which is known to have kinase-like folds. A docking study of the FDA approved drugs against GC was performed using AutoDock 4.2 and Glide Schrodinger suite 2019 against SARS-CoV-2-RdRp protein. MMGBSA and MD simulation studies were performed to investigate the binding and stability of the inhibitors with the target protein. In this study, we have found 12 kinase inhibitors with high binding energies namely Baricitinib, Brepocitinib, Decernotinib, Fasudil, Filgotinib, GSK2606414, Peficitinib, Ruxolitinib, Tofacitinib, Upadacitinib, Pamapimod and Ibrutinib. These FDA approved drugs against GC can play a key role in the treatment of COVID-19 patients along with GC as comorbidity. We also hypothesize that JAK, ITK, Rho-associated kinases, FGFR2, FYN, PERK, TYK2, p38-MAPK and SYK kinases can be considered as key therapeutic targets in COVID-19 treatment. Taken altogether, we have proposed the SARS-CoV-2-RdRp as a potential therapeutic target through in-silico studies. However, further in-vitro and in-vivo studies are required for the validation of the proposed targets and drugs for the treatment of COVID-19 patients already suffering from GC. |
format | Online Article Text |
id | pubmed-8420180 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Elsevier Ltd. |
record_format | MEDLINE/PubMed |
spelling | pubmed-84201802021-09-07 Repurposing of gastric cancer drugs against COVID-19 Sonkar, Charu Doharey, Pawan Kumar Rathore, Anuranjan Singh Singh, Vishal Kashyap, Dharmendra Sahoo, Amaresh Kumar Mittal, Nitish Sharma, Bechan Jha, Hem Chandra Comput Biol Med Article Corona Virus Disease 2019 (COVID-19) caused by Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) has become a global pandemic. Additionally, the SARS-CoV-2 infection in the patients of Gastric Cancer (GC; the third leading cause of death in the world) pose a great challenge for the health management of the patients. Since there have been uncertainties to develop a new drug against COVID-19, there is an urgent need for repurposing drugs that can target key proteins of both SARS-CoV-2 and GC. The SARS-CoV-2-RdRp protein contains the NiRAN domain, which is known to have kinase-like folds. A docking study of the FDA approved drugs against GC was performed using AutoDock 4.2 and Glide Schrodinger suite 2019 against SARS-CoV-2-RdRp protein. MMGBSA and MD simulation studies were performed to investigate the binding and stability of the inhibitors with the target protein. In this study, we have found 12 kinase inhibitors with high binding energies namely Baricitinib, Brepocitinib, Decernotinib, Fasudil, Filgotinib, GSK2606414, Peficitinib, Ruxolitinib, Tofacitinib, Upadacitinib, Pamapimod and Ibrutinib. These FDA approved drugs against GC can play a key role in the treatment of COVID-19 patients along with GC as comorbidity. We also hypothesize that JAK, ITK, Rho-associated kinases, FGFR2, FYN, PERK, TYK2, p38-MAPK and SYK kinases can be considered as key therapeutic targets in COVID-19 treatment. Taken altogether, we have proposed the SARS-CoV-2-RdRp as a potential therapeutic target through in-silico studies. However, further in-vitro and in-vivo studies are required for the validation of the proposed targets and drugs for the treatment of COVID-19 patients already suffering from GC. Elsevier Ltd. 2021-10 2021-09-06 /pmc/articles/PMC8420180/ /pubmed/34537409 http://dx.doi.org/10.1016/j.compbiomed.2021.104826 Text en © 2021 Elsevier Ltd. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active. |
spellingShingle | Article Sonkar, Charu Doharey, Pawan Kumar Rathore, Anuranjan Singh Singh, Vishal Kashyap, Dharmendra Sahoo, Amaresh Kumar Mittal, Nitish Sharma, Bechan Jha, Hem Chandra Repurposing of gastric cancer drugs against COVID-19 |
title | Repurposing of gastric cancer drugs against COVID-19 |
title_full | Repurposing of gastric cancer drugs against COVID-19 |
title_fullStr | Repurposing of gastric cancer drugs against COVID-19 |
title_full_unstemmed | Repurposing of gastric cancer drugs against COVID-19 |
title_short | Repurposing of gastric cancer drugs against COVID-19 |
title_sort | repurposing of gastric cancer drugs against covid-19 |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8420180/ https://www.ncbi.nlm.nih.gov/pubmed/34537409 http://dx.doi.org/10.1016/j.compbiomed.2021.104826 |
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