Cargando…
The US COVID Atlas: A dynamic cyberinfrastructure surveillance system for interactive exploration of the pandemic
Distributed spatial infrastructures leveraging cloud computing technologies can tackle issues of disparate data sources and address the need for data‐driven knowledge discovery and more sophisticated spatial analysis central to the COVID‐19 pandemic. We implement a new, open source spatial middlewar...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8420397/ https://www.ncbi.nlm.nih.gov/pubmed/34512108 http://dx.doi.org/10.1111/tgis.12786 |
_version_ | 1783748910943043584 |
---|---|
author | Kolak, Marynia Li, Xun Lin, Qinyun Wang, Ryan Menghaney, Moksha Yang, Stephanie Anguiano, Vidal |
author_facet | Kolak, Marynia Li, Xun Lin, Qinyun Wang, Ryan Menghaney, Moksha Yang, Stephanie Anguiano, Vidal |
author_sort | Kolak, Marynia |
collection | PubMed |
description | Distributed spatial infrastructures leveraging cloud computing technologies can tackle issues of disparate data sources and address the need for data‐driven knowledge discovery and more sophisticated spatial analysis central to the COVID‐19 pandemic. We implement a new, open source spatial middleware component (libgeoda) and system design to scale development quickly to effectively meet the need for surveilling county‐level metrics in a rapidly changing pandemic landscape. We incorporate, wrangle, and analyze multiple data streams from volunteered and crowdsourced environments to leverage multiple data perspectives. We integrate explorative spatial data analysis (ESDA) and statistical hotspot standards to detect infectious disease clusters in real time, building on decades of research in GIScience and spatial statistics. We scale the computational infrastructure to provide equitable access to data and insights across the entire USA, demanding a basic but high‐quality standard of ESDA techniques. Finally, we engage a research coalition and incorporate principles of user‐centered design to ground the direction and design of Atlas application development. |
format | Online Article Text |
id | pubmed-8420397 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-84203972021-09-07 The US COVID Atlas: A dynamic cyberinfrastructure surveillance system for interactive exploration of the pandemic Kolak, Marynia Li, Xun Lin, Qinyun Wang, Ryan Menghaney, Moksha Yang, Stephanie Anguiano, Vidal Trans GIS Special Section: Cyberinfrastructure and Intelligent Spatial Decision Support Systems Distributed spatial infrastructures leveraging cloud computing technologies can tackle issues of disparate data sources and address the need for data‐driven knowledge discovery and more sophisticated spatial analysis central to the COVID‐19 pandemic. We implement a new, open source spatial middleware component (libgeoda) and system design to scale development quickly to effectively meet the need for surveilling county‐level metrics in a rapidly changing pandemic landscape. We incorporate, wrangle, and analyze multiple data streams from volunteered and crowdsourced environments to leverage multiple data perspectives. We integrate explorative spatial data analysis (ESDA) and statistical hotspot standards to detect infectious disease clusters in real time, building on decades of research in GIScience and spatial statistics. We scale the computational infrastructure to provide equitable access to data and insights across the entire USA, demanding a basic but high‐quality standard of ESDA techniques. Finally, we engage a research coalition and incorporate principles of user‐centered design to ground the direction and design of Atlas application development. John Wiley and Sons Inc. 2021-06-30 2021-08 /pmc/articles/PMC8420397/ /pubmed/34512108 http://dx.doi.org/10.1111/tgis.12786 Text en © 2021 The Authors. Transactions in GIS published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes. |
spellingShingle | Special Section: Cyberinfrastructure and Intelligent Spatial Decision Support Systems Kolak, Marynia Li, Xun Lin, Qinyun Wang, Ryan Menghaney, Moksha Yang, Stephanie Anguiano, Vidal The US COVID Atlas: A dynamic cyberinfrastructure surveillance system for interactive exploration of the pandemic |
title | The US COVID Atlas: A dynamic cyberinfrastructure surveillance system for interactive exploration of the pandemic |
title_full | The US COVID Atlas: A dynamic cyberinfrastructure surveillance system for interactive exploration of the pandemic |
title_fullStr | The US COVID Atlas: A dynamic cyberinfrastructure surveillance system for interactive exploration of the pandemic |
title_full_unstemmed | The US COVID Atlas: A dynamic cyberinfrastructure surveillance system for interactive exploration of the pandemic |
title_short | The US COVID Atlas: A dynamic cyberinfrastructure surveillance system for interactive exploration of the pandemic |
title_sort | us covid atlas: a dynamic cyberinfrastructure surveillance system for interactive exploration of the pandemic |
topic | Special Section: Cyberinfrastructure and Intelligent Spatial Decision Support Systems |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8420397/ https://www.ncbi.nlm.nih.gov/pubmed/34512108 http://dx.doi.org/10.1111/tgis.12786 |
work_keys_str_mv | AT kolakmarynia theuscovidatlasadynamiccyberinfrastructuresurveillancesystemforinteractiveexplorationofthepandemic AT lixun theuscovidatlasadynamiccyberinfrastructuresurveillancesystemforinteractiveexplorationofthepandemic AT linqinyun theuscovidatlasadynamiccyberinfrastructuresurveillancesystemforinteractiveexplorationofthepandemic AT wangryan theuscovidatlasadynamiccyberinfrastructuresurveillancesystemforinteractiveexplorationofthepandemic AT menghaneymoksha theuscovidatlasadynamiccyberinfrastructuresurveillancesystemforinteractiveexplorationofthepandemic AT yangstephanie theuscovidatlasadynamiccyberinfrastructuresurveillancesystemforinteractiveexplorationofthepandemic AT anguianovidal theuscovidatlasadynamiccyberinfrastructuresurveillancesystemforinteractiveexplorationofthepandemic AT kolakmarynia uscovidatlasadynamiccyberinfrastructuresurveillancesystemforinteractiveexplorationofthepandemic AT lixun uscovidatlasadynamiccyberinfrastructuresurveillancesystemforinteractiveexplorationofthepandemic AT linqinyun uscovidatlasadynamiccyberinfrastructuresurveillancesystemforinteractiveexplorationofthepandemic AT wangryan uscovidatlasadynamiccyberinfrastructuresurveillancesystemforinteractiveexplorationofthepandemic AT menghaneymoksha uscovidatlasadynamiccyberinfrastructuresurveillancesystemforinteractiveexplorationofthepandemic AT yangstephanie uscovidatlasadynamiccyberinfrastructuresurveillancesystemforinteractiveexplorationofthepandemic AT anguianovidal uscovidatlasadynamiccyberinfrastructuresurveillancesystemforinteractiveexplorationofthepandemic |