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Deep learning for improving non-destructive grain mapping in 3D
Laboratory X-ray diffraction contrast tomography (LabDCT) is a novel imaging technique for non-destructive 3D characterization of grain structures. An accurate grain reconstruction critically relies on precise segmentation of diffraction spots in the LabDCT images. The conventional method utilizing...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8420763/ https://www.ncbi.nlm.nih.gov/pubmed/34584734 http://dx.doi.org/10.1107/S2052252521005480 |
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author | Fang, H. Hovad, E. Zhang, Y. Clemmensen, L. K. H. Ersbøll, B. Kjaer Juul Jensen, D. |
author_facet | Fang, H. Hovad, E. Zhang, Y. Clemmensen, L. K. H. Ersbøll, B. Kjaer Juul Jensen, D. |
author_sort | Fang, H. |
collection | PubMed |
description | Laboratory X-ray diffraction contrast tomography (LabDCT) is a novel imaging technique for non-destructive 3D characterization of grain structures. An accurate grain reconstruction critically relies on precise segmentation of diffraction spots in the LabDCT images. The conventional method utilizing various filters generally satisfies segmentation of sharp spots in the images, thereby serving as a standard routine, but it also very often leads to over or under segmentation of spots, especially those with low signal-to-noise ratios and/or small sizes. The standard routine also requires a fine tuning of the filtering parameters. To overcome these challenges, a deep learning neural network is presented to efficiently and accurately clean the background noise, thereby easing the spot segmentation. The deep learning network is first trained with input images, synthesized using a forward simulation model for LabDCT in combination with a generic approach to extract features of experimental backgrounds. Then, the network is applied to remove the background noise from experimental images measured under different geometrical conditions for different samples. Comparisons of both processed images and grain reconstructions show that the deep learning method outperforms the standard routine, demonstrating significantly better grain mapping. |
format | Online Article Text |
id | pubmed-8420763 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-84207632021-09-27 Deep learning for improving non-destructive grain mapping in 3D Fang, H. Hovad, E. Zhang, Y. Clemmensen, L. K. H. Ersbøll, B. Kjaer Juul Jensen, D. IUCrJ Research Papers Laboratory X-ray diffraction contrast tomography (LabDCT) is a novel imaging technique for non-destructive 3D characterization of grain structures. An accurate grain reconstruction critically relies on precise segmentation of diffraction spots in the LabDCT images. The conventional method utilizing various filters generally satisfies segmentation of sharp spots in the images, thereby serving as a standard routine, but it also very often leads to over or under segmentation of spots, especially those with low signal-to-noise ratios and/or small sizes. The standard routine also requires a fine tuning of the filtering parameters. To overcome these challenges, a deep learning neural network is presented to efficiently and accurately clean the background noise, thereby easing the spot segmentation. The deep learning network is first trained with input images, synthesized using a forward simulation model for LabDCT in combination with a generic approach to extract features of experimental backgrounds. Then, the network is applied to remove the background noise from experimental images measured under different geometrical conditions for different samples. Comparisons of both processed images and grain reconstructions show that the deep learning method outperforms the standard routine, demonstrating significantly better grain mapping. International Union of Crystallography 2021-07-15 /pmc/articles/PMC8420763/ /pubmed/34584734 http://dx.doi.org/10.1107/S2052252521005480 Text en © H. Fang et al. 2021 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Fang, H. Hovad, E. Zhang, Y. Clemmensen, L. K. H. Ersbøll, B. Kjaer Juul Jensen, D. Deep learning for improving non-destructive grain mapping in 3D |
title | Deep learning for improving non-destructive grain mapping in 3D |
title_full | Deep learning for improving non-destructive grain mapping in 3D |
title_fullStr | Deep learning for improving non-destructive grain mapping in 3D |
title_full_unstemmed | Deep learning for improving non-destructive grain mapping in 3D |
title_short | Deep learning for improving non-destructive grain mapping in 3D |
title_sort | deep learning for improving non-destructive grain mapping in 3d |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8420763/ https://www.ncbi.nlm.nih.gov/pubmed/34584734 http://dx.doi.org/10.1107/S2052252521005480 |
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