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Establishment of an Immune-Related Gene Signature for Risk Stratification for Patients with Glioma

Glioma is a frequently seen primary malignant intracranial tumor, characterized by poor prognosis. The study is aimed at constructing a prognostic model for risk stratification in patients suffering from glioma. Weighted gene coexpression network analysis (WGCNA), integrated transcriptome analysis,...

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Autores principales: He, Jimin, Zeng, Chun, Long, Yong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8420975/
https://www.ncbi.nlm.nih.gov/pubmed/34497663
http://dx.doi.org/10.1155/2021/2191709
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author He, Jimin
Zeng, Chun
Long, Yong
author_facet He, Jimin
Zeng, Chun
Long, Yong
author_sort He, Jimin
collection PubMed
description Glioma is a frequently seen primary malignant intracranial tumor, characterized by poor prognosis. The study is aimed at constructing a prognostic model for risk stratification in patients suffering from glioma. Weighted gene coexpression network analysis (WGCNA), integrated transcriptome analysis, and combining immune-related genes (IRGs) were used to identify core differentially expressed IRGs (DE IRGs). Subsequently, univariate and multivariate Cox regression analyses were utilized to establish an immune-related risk score (IRRS) model for risk stratification for glioma patients. Furthermore, a nomogram was developed for predicting glioma patients' overall survival (OS). The turquoise module (cor = 0.67; P < 0.001) and its genes (n = 1092) were significantly pertinent to glioma progression. Ultimately, multivariate Cox regression analysis constructed an IRRS model based on VEGFA, SOCS3, SPP1, and TGFB2 core DE IRGs, with a C-index of 0.811 (95% CI: 0.786-0.836). Then, Kaplan-Meier (KM) survival curves revealed that patients presenting high risk had a dismal outcome (P < 0.0001). Also, this IRRS model was found to be an independent prognostic indicator of gliomas' survival prediction, with HR of 1.89 (95% CI: 1.252-2.85) and 2.17 (95% CI: 1.493-3.14) in the Cancer Genome Atlas (TCGA) and Chinese Glioma Genome Atlas (CGGA) datasets, respectively. We established the IRRS prognostic model, capable of effectively stratifying glioma population, convenient for decision-making in clinical practice.
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spelling pubmed-84209752021-09-07 Establishment of an Immune-Related Gene Signature for Risk Stratification for Patients with Glioma He, Jimin Zeng, Chun Long, Yong Comput Math Methods Med Research Article Glioma is a frequently seen primary malignant intracranial tumor, characterized by poor prognosis. The study is aimed at constructing a prognostic model for risk stratification in patients suffering from glioma. Weighted gene coexpression network analysis (WGCNA), integrated transcriptome analysis, and combining immune-related genes (IRGs) were used to identify core differentially expressed IRGs (DE IRGs). Subsequently, univariate and multivariate Cox regression analyses were utilized to establish an immune-related risk score (IRRS) model for risk stratification for glioma patients. Furthermore, a nomogram was developed for predicting glioma patients' overall survival (OS). The turquoise module (cor = 0.67; P < 0.001) and its genes (n = 1092) were significantly pertinent to glioma progression. Ultimately, multivariate Cox regression analysis constructed an IRRS model based on VEGFA, SOCS3, SPP1, and TGFB2 core DE IRGs, with a C-index of 0.811 (95% CI: 0.786-0.836). Then, Kaplan-Meier (KM) survival curves revealed that patients presenting high risk had a dismal outcome (P < 0.0001). Also, this IRRS model was found to be an independent prognostic indicator of gliomas' survival prediction, with HR of 1.89 (95% CI: 1.252-2.85) and 2.17 (95% CI: 1.493-3.14) in the Cancer Genome Atlas (TCGA) and Chinese Glioma Genome Atlas (CGGA) datasets, respectively. We established the IRRS prognostic model, capable of effectively stratifying glioma population, convenient for decision-making in clinical practice. Hindawi 2021-08-27 /pmc/articles/PMC8420975/ /pubmed/34497663 http://dx.doi.org/10.1155/2021/2191709 Text en Copyright © 2021 Jimin He et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
He, Jimin
Zeng, Chun
Long, Yong
Establishment of an Immune-Related Gene Signature for Risk Stratification for Patients with Glioma
title Establishment of an Immune-Related Gene Signature for Risk Stratification for Patients with Glioma
title_full Establishment of an Immune-Related Gene Signature for Risk Stratification for Patients with Glioma
title_fullStr Establishment of an Immune-Related Gene Signature for Risk Stratification for Patients with Glioma
title_full_unstemmed Establishment of an Immune-Related Gene Signature for Risk Stratification for Patients with Glioma
title_short Establishment of an Immune-Related Gene Signature for Risk Stratification for Patients with Glioma
title_sort establishment of an immune-related gene signature for risk stratification for patients with glioma
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8420975/
https://www.ncbi.nlm.nih.gov/pubmed/34497663
http://dx.doi.org/10.1155/2021/2191709
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