Cargando…

Comparative genomic analysis reveals metabolic flexibility of Woesearchaeota

The archaeal phylum Woesearchaeota, within the DPANN superphylum, includes phylogenetically diverse microorganisms that inhabit various environments. Their biology is poorly understood due to the lack of cultured isolates. Here, we analyze datasets of Woesearchaeota 16S rRNA gene sequences and metag...

Descripción completa

Detalles Bibliográficos
Autores principales: Huang, Wen-Cong, Liu, Yang, Zhang, Xinxu, Zhang, Cui-Jing, Zou, Dayu, Zheng, Shiling, Xu, Wei, Luo, Zhuhua, Liu, Fanghua, Li, Meng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8421398/
https://www.ncbi.nlm.nih.gov/pubmed/34489402
http://dx.doi.org/10.1038/s41467-021-25565-9
_version_ 1783749074555502592
author Huang, Wen-Cong
Liu, Yang
Zhang, Xinxu
Zhang, Cui-Jing
Zou, Dayu
Zheng, Shiling
Xu, Wei
Luo, Zhuhua
Liu, Fanghua
Li, Meng
author_facet Huang, Wen-Cong
Liu, Yang
Zhang, Xinxu
Zhang, Cui-Jing
Zou, Dayu
Zheng, Shiling
Xu, Wei
Luo, Zhuhua
Liu, Fanghua
Li, Meng
author_sort Huang, Wen-Cong
collection PubMed
description The archaeal phylum Woesearchaeota, within the DPANN superphylum, includes phylogenetically diverse microorganisms that inhabit various environments. Their biology is poorly understood due to the lack of cultured isolates. Here, we analyze datasets of Woesearchaeota 16S rRNA gene sequences and metagenome-assembled genomes to infer global distribution patterns, ecological preferences and metabolic capabilities. Phylogenomic analyses indicate that the phylum can be classified into ten subgroups, termed A–J. While a symbiotic lifestyle is predicted for most, some members of subgroup J might be host-independent. The genomes of several Woesearchaeota, including subgroup J, encode putative [FeFe] hydrogenases (known to be important for fermentation in other organisms), suggesting that these archaea might be anaerobic fermentative heterotrophs.
format Online
Article
Text
id pubmed-8421398
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-84213982021-09-22 Comparative genomic analysis reveals metabolic flexibility of Woesearchaeota Huang, Wen-Cong Liu, Yang Zhang, Xinxu Zhang, Cui-Jing Zou, Dayu Zheng, Shiling Xu, Wei Luo, Zhuhua Liu, Fanghua Li, Meng Nat Commun Article The archaeal phylum Woesearchaeota, within the DPANN superphylum, includes phylogenetically diverse microorganisms that inhabit various environments. Their biology is poorly understood due to the lack of cultured isolates. Here, we analyze datasets of Woesearchaeota 16S rRNA gene sequences and metagenome-assembled genomes to infer global distribution patterns, ecological preferences and metabolic capabilities. Phylogenomic analyses indicate that the phylum can be classified into ten subgroups, termed A–J. While a symbiotic lifestyle is predicted for most, some members of subgroup J might be host-independent. The genomes of several Woesearchaeota, including subgroup J, encode putative [FeFe] hydrogenases (known to be important for fermentation in other organisms), suggesting that these archaea might be anaerobic fermentative heterotrophs. Nature Publishing Group UK 2021-09-06 /pmc/articles/PMC8421398/ /pubmed/34489402 http://dx.doi.org/10.1038/s41467-021-25565-9 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Huang, Wen-Cong
Liu, Yang
Zhang, Xinxu
Zhang, Cui-Jing
Zou, Dayu
Zheng, Shiling
Xu, Wei
Luo, Zhuhua
Liu, Fanghua
Li, Meng
Comparative genomic analysis reveals metabolic flexibility of Woesearchaeota
title Comparative genomic analysis reveals metabolic flexibility of Woesearchaeota
title_full Comparative genomic analysis reveals metabolic flexibility of Woesearchaeota
title_fullStr Comparative genomic analysis reveals metabolic flexibility of Woesearchaeota
title_full_unstemmed Comparative genomic analysis reveals metabolic flexibility of Woesearchaeota
title_short Comparative genomic analysis reveals metabolic flexibility of Woesearchaeota
title_sort comparative genomic analysis reveals metabolic flexibility of woesearchaeota
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8421398/
https://www.ncbi.nlm.nih.gov/pubmed/34489402
http://dx.doi.org/10.1038/s41467-021-25565-9
work_keys_str_mv AT huangwencong comparativegenomicanalysisrevealsmetabolicflexibilityofwoesearchaeota
AT liuyang comparativegenomicanalysisrevealsmetabolicflexibilityofwoesearchaeota
AT zhangxinxu comparativegenomicanalysisrevealsmetabolicflexibilityofwoesearchaeota
AT zhangcuijing comparativegenomicanalysisrevealsmetabolicflexibilityofwoesearchaeota
AT zoudayu comparativegenomicanalysisrevealsmetabolicflexibilityofwoesearchaeota
AT zhengshiling comparativegenomicanalysisrevealsmetabolicflexibilityofwoesearchaeota
AT xuwei comparativegenomicanalysisrevealsmetabolicflexibilityofwoesearchaeota
AT luozhuhua comparativegenomicanalysisrevealsmetabolicflexibilityofwoesearchaeota
AT liufanghua comparativegenomicanalysisrevealsmetabolicflexibilityofwoesearchaeota
AT limeng comparativegenomicanalysisrevealsmetabolicflexibilityofwoesearchaeota