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Comparative genomic analysis reveals metabolic flexibility of Woesearchaeota
The archaeal phylum Woesearchaeota, within the DPANN superphylum, includes phylogenetically diverse microorganisms that inhabit various environments. Their biology is poorly understood due to the lack of cultured isolates. Here, we analyze datasets of Woesearchaeota 16S rRNA gene sequences and metag...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8421398/ https://www.ncbi.nlm.nih.gov/pubmed/34489402 http://dx.doi.org/10.1038/s41467-021-25565-9 |
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author | Huang, Wen-Cong Liu, Yang Zhang, Xinxu Zhang, Cui-Jing Zou, Dayu Zheng, Shiling Xu, Wei Luo, Zhuhua Liu, Fanghua Li, Meng |
author_facet | Huang, Wen-Cong Liu, Yang Zhang, Xinxu Zhang, Cui-Jing Zou, Dayu Zheng, Shiling Xu, Wei Luo, Zhuhua Liu, Fanghua Li, Meng |
author_sort | Huang, Wen-Cong |
collection | PubMed |
description | The archaeal phylum Woesearchaeota, within the DPANN superphylum, includes phylogenetically diverse microorganisms that inhabit various environments. Their biology is poorly understood due to the lack of cultured isolates. Here, we analyze datasets of Woesearchaeota 16S rRNA gene sequences and metagenome-assembled genomes to infer global distribution patterns, ecological preferences and metabolic capabilities. Phylogenomic analyses indicate that the phylum can be classified into ten subgroups, termed A–J. While a symbiotic lifestyle is predicted for most, some members of subgroup J might be host-independent. The genomes of several Woesearchaeota, including subgroup J, encode putative [FeFe] hydrogenases (known to be important for fermentation in other organisms), suggesting that these archaea might be anaerobic fermentative heterotrophs. |
format | Online Article Text |
id | pubmed-8421398 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-84213982021-09-22 Comparative genomic analysis reveals metabolic flexibility of Woesearchaeota Huang, Wen-Cong Liu, Yang Zhang, Xinxu Zhang, Cui-Jing Zou, Dayu Zheng, Shiling Xu, Wei Luo, Zhuhua Liu, Fanghua Li, Meng Nat Commun Article The archaeal phylum Woesearchaeota, within the DPANN superphylum, includes phylogenetically diverse microorganisms that inhabit various environments. Their biology is poorly understood due to the lack of cultured isolates. Here, we analyze datasets of Woesearchaeota 16S rRNA gene sequences and metagenome-assembled genomes to infer global distribution patterns, ecological preferences and metabolic capabilities. Phylogenomic analyses indicate that the phylum can be classified into ten subgroups, termed A–J. While a symbiotic lifestyle is predicted for most, some members of subgroup J might be host-independent. The genomes of several Woesearchaeota, including subgroup J, encode putative [FeFe] hydrogenases (known to be important for fermentation in other organisms), suggesting that these archaea might be anaerobic fermentative heterotrophs. Nature Publishing Group UK 2021-09-06 /pmc/articles/PMC8421398/ /pubmed/34489402 http://dx.doi.org/10.1038/s41467-021-25565-9 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Huang, Wen-Cong Liu, Yang Zhang, Xinxu Zhang, Cui-Jing Zou, Dayu Zheng, Shiling Xu, Wei Luo, Zhuhua Liu, Fanghua Li, Meng Comparative genomic analysis reveals metabolic flexibility of Woesearchaeota |
title | Comparative genomic analysis reveals metabolic flexibility of Woesearchaeota |
title_full | Comparative genomic analysis reveals metabolic flexibility of Woesearchaeota |
title_fullStr | Comparative genomic analysis reveals metabolic flexibility of Woesearchaeota |
title_full_unstemmed | Comparative genomic analysis reveals metabolic flexibility of Woesearchaeota |
title_short | Comparative genomic analysis reveals metabolic flexibility of Woesearchaeota |
title_sort | comparative genomic analysis reveals metabolic flexibility of woesearchaeota |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8421398/ https://www.ncbi.nlm.nih.gov/pubmed/34489402 http://dx.doi.org/10.1038/s41467-021-25565-9 |
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