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Functional genomics approaches to improve pre‐clinical drug screening and biomarker discovery

Advances in sequencing technology have enabled the genomic and transcriptomic characterization of human malignancies with unprecedented detail. However, this wealth of information has been slow to translate into clinically meaningful outcomes. Different models to study human cancers have been establ...

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Autores principales: Nguyen, Long V, Caldas, Carlos
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8422077/
https://www.ncbi.nlm.nih.gov/pubmed/34254730
http://dx.doi.org/10.15252/emmm.202013189
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author Nguyen, Long V
Caldas, Carlos
author_facet Nguyen, Long V
Caldas, Carlos
author_sort Nguyen, Long V
collection PubMed
description Advances in sequencing technology have enabled the genomic and transcriptomic characterization of human malignancies with unprecedented detail. However, this wealth of information has been slow to translate into clinically meaningful outcomes. Different models to study human cancers have been established and extensively characterized. Using these models, functional genomic screens and pre‐clinical drug screening platforms have identified genetic dependencies that can be exploited with drug therapy. These genetic dependencies can also be used as biomarkers to predict response to treatment. For many cancers, the identification of such biomarkers remains elusive. In this review, we discuss the development and characterization of models used to study human cancers, RNA interference and CRISPR screens to identify genetic dependencies, large‐scale pharmacogenomics studies and drug screening approaches to improve pre‐clinical drug screening and biomarker discovery.
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spelling pubmed-84220772021-09-10 Functional genomics approaches to improve pre‐clinical drug screening and biomarker discovery Nguyen, Long V Caldas, Carlos EMBO Mol Med Reviews Advances in sequencing technology have enabled the genomic and transcriptomic characterization of human malignancies with unprecedented detail. However, this wealth of information has been slow to translate into clinically meaningful outcomes. Different models to study human cancers have been established and extensively characterized. Using these models, functional genomic screens and pre‐clinical drug screening platforms have identified genetic dependencies that can be exploited with drug therapy. These genetic dependencies can also be used as biomarkers to predict response to treatment. For many cancers, the identification of such biomarkers remains elusive. In this review, we discuss the development and characterization of models used to study human cancers, RNA interference and CRISPR screens to identify genetic dependencies, large‐scale pharmacogenomics studies and drug screening approaches to improve pre‐clinical drug screening and biomarker discovery. John Wiley and Sons Inc. 2021-07-13 2021-09-07 /pmc/articles/PMC8422077/ /pubmed/34254730 http://dx.doi.org/10.15252/emmm.202013189 Text en © 2021 The Authors. Published under the terms of the CC BY 4.0 license https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Reviews
Nguyen, Long V
Caldas, Carlos
Functional genomics approaches to improve pre‐clinical drug screening and biomarker discovery
title Functional genomics approaches to improve pre‐clinical drug screening and biomarker discovery
title_full Functional genomics approaches to improve pre‐clinical drug screening and biomarker discovery
title_fullStr Functional genomics approaches to improve pre‐clinical drug screening and biomarker discovery
title_full_unstemmed Functional genomics approaches to improve pre‐clinical drug screening and biomarker discovery
title_short Functional genomics approaches to improve pre‐clinical drug screening and biomarker discovery
title_sort functional genomics approaches to improve pre‐clinical drug screening and biomarker discovery
topic Reviews
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8422077/
https://www.ncbi.nlm.nih.gov/pubmed/34254730
http://dx.doi.org/10.15252/emmm.202013189
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