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Pneumonia detection in chest X-ray images using an ensemble of deep learning models

Pneumonia is a respiratory infection caused by bacteria or viruses; it affects many individuals, especially in developing and underdeveloped nations, where high levels of pollution, unhygienic living conditions, and overcrowding are relatively common, together with inadequate medical infrastructure....

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Autores principales: Kundu, Rohit, Das, Ritacheta, Geem, Zong Woo, Han, Gi-Tae, Sarkar, Ram
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8423280/
https://www.ncbi.nlm.nih.gov/pubmed/34492046
http://dx.doi.org/10.1371/journal.pone.0256630
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author Kundu, Rohit
Das, Ritacheta
Geem, Zong Woo
Han, Gi-Tae
Sarkar, Ram
author_facet Kundu, Rohit
Das, Ritacheta
Geem, Zong Woo
Han, Gi-Tae
Sarkar, Ram
author_sort Kundu, Rohit
collection PubMed
description Pneumonia is a respiratory infection caused by bacteria or viruses; it affects many individuals, especially in developing and underdeveloped nations, where high levels of pollution, unhygienic living conditions, and overcrowding are relatively common, together with inadequate medical infrastructure. Pneumonia causes pleural effusion, a condition in which fluids fill the lung, causing respiratory difficulty. Early diagnosis of pneumonia is crucial to ensure curative treatment and increase survival rates. Chest X-ray imaging is the most frequently used method for diagnosing pneumonia. However, the examination of chest X-rays is a challenging task and is prone to subjective variability. In this study, we developed a computer-aided diagnosis system for automatic pneumonia detection using chest X-ray images. We employed deep transfer learning to handle the scarcity of available data and designed an ensemble of three convolutional neural network models: GoogLeNet, ResNet-18, and DenseNet-121. A weighted average ensemble technique was adopted, wherein the weights assigned to the base learners were determined using a novel approach. The scores of four standard evaluation metrics, precision, recall, f1-score, and the area under the curve, are fused to form the weight vector, which in studies in the literature was frequently set experimentally, a method that is prone to error. The proposed approach was evaluated on two publicly available pneumonia X-ray datasets, provided by Kermany et al. and the Radiological Society of North America (RSNA), respectively, using a five-fold cross-validation scheme. The proposed method achieved accuracy rates of 98.81% and 86.85% and sensitivity rates of 98.80% and 87.02% on the Kermany and RSNA datasets, respectively. The results were superior to those of state-of-the-art methods and our method performed better than the widely used ensemble techniques. Statistical analyses on the datasets using McNemar’s and ANOVA tests showed the robustness of the approach. The codes for the proposed work are available at https://github.com/Rohit-Kundu/Ensemble-Pneumonia-Detection.
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spelling pubmed-84232802021-09-08 Pneumonia detection in chest X-ray images using an ensemble of deep learning models Kundu, Rohit Das, Ritacheta Geem, Zong Woo Han, Gi-Tae Sarkar, Ram PLoS One Research Article Pneumonia is a respiratory infection caused by bacteria or viruses; it affects many individuals, especially in developing and underdeveloped nations, where high levels of pollution, unhygienic living conditions, and overcrowding are relatively common, together with inadequate medical infrastructure. Pneumonia causes pleural effusion, a condition in which fluids fill the lung, causing respiratory difficulty. Early diagnosis of pneumonia is crucial to ensure curative treatment and increase survival rates. Chest X-ray imaging is the most frequently used method for diagnosing pneumonia. However, the examination of chest X-rays is a challenging task and is prone to subjective variability. In this study, we developed a computer-aided diagnosis system for automatic pneumonia detection using chest X-ray images. We employed deep transfer learning to handle the scarcity of available data and designed an ensemble of three convolutional neural network models: GoogLeNet, ResNet-18, and DenseNet-121. A weighted average ensemble technique was adopted, wherein the weights assigned to the base learners were determined using a novel approach. The scores of four standard evaluation metrics, precision, recall, f1-score, and the area under the curve, are fused to form the weight vector, which in studies in the literature was frequently set experimentally, a method that is prone to error. The proposed approach was evaluated on two publicly available pneumonia X-ray datasets, provided by Kermany et al. and the Radiological Society of North America (RSNA), respectively, using a five-fold cross-validation scheme. The proposed method achieved accuracy rates of 98.81% and 86.85% and sensitivity rates of 98.80% and 87.02% on the Kermany and RSNA datasets, respectively. The results were superior to those of state-of-the-art methods and our method performed better than the widely used ensemble techniques. Statistical analyses on the datasets using McNemar’s and ANOVA tests showed the robustness of the approach. The codes for the proposed work are available at https://github.com/Rohit-Kundu/Ensemble-Pneumonia-Detection. Public Library of Science 2021-09-07 /pmc/articles/PMC8423280/ /pubmed/34492046 http://dx.doi.org/10.1371/journal.pone.0256630 Text en © 2021 Kundu et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Kundu, Rohit
Das, Ritacheta
Geem, Zong Woo
Han, Gi-Tae
Sarkar, Ram
Pneumonia detection in chest X-ray images using an ensemble of deep learning models
title Pneumonia detection in chest X-ray images using an ensemble of deep learning models
title_full Pneumonia detection in chest X-ray images using an ensemble of deep learning models
title_fullStr Pneumonia detection in chest X-ray images using an ensemble of deep learning models
title_full_unstemmed Pneumonia detection in chest X-ray images using an ensemble of deep learning models
title_short Pneumonia detection in chest X-ray images using an ensemble of deep learning models
title_sort pneumonia detection in chest x-ray images using an ensemble of deep learning models
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8423280/
https://www.ncbi.nlm.nih.gov/pubmed/34492046
http://dx.doi.org/10.1371/journal.pone.0256630
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