Cargando…

Dual-Path Attention Compensation U-Net for Stroke Lesion Segmentation

For the segmentation task of stroke lesions, using the attention U-Net model based on the self-attention mechanism can suppress irrelevant regions in an input image while highlighting salient features useful for specific tasks. However, when the lesion is small and the lesion contour is blurred, att...

Descripción completa

Detalles Bibliográficos
Autores principales: Hui, Haisheng, Zhang, Xueying, Wu, Zelin, Li, Fenlian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8423551/
https://www.ncbi.nlm.nih.gov/pubmed/34504522
http://dx.doi.org/10.1155/2021/7552185
_version_ 1783749487019163648
author Hui, Haisheng
Zhang, Xueying
Wu, Zelin
Li, Fenlian
author_facet Hui, Haisheng
Zhang, Xueying
Wu, Zelin
Li, Fenlian
author_sort Hui, Haisheng
collection PubMed
description For the segmentation task of stroke lesions, using the attention U-Net model based on the self-attention mechanism can suppress irrelevant regions in an input image while highlighting salient features useful for specific tasks. However, when the lesion is small and the lesion contour is blurred, attention U-Net may generate wrong attention coefficient maps, leading to incorrect segmentation results. To cope with this issue, we propose a dual-path attention compensation U-Net (DPAC-UNet) network, which consists of a primary network and auxiliary path network. Both networks are attention U-Net models and identical in structure. The primary path network is the core network that performs accurate lesion segmentation and outputting of the final segmentation result. The auxiliary path network generates auxiliary attention compensation coefficients and sends them to the primary path network to compensate for and correct possible attention coefficient errors. To realize the compensation mechanism of DPAC-UNet, we propose a weighted binary cross-entropy Tversky (WBCE-Tversky) loss to train the primary path network to achieve accurate segmentation and propose another compound loss function called tolerance loss to train the auxiliary path network to generate auxiliary compensation attention coefficient maps with expanded coverage area to perform compensate operations. We conducted segmentation experiments using the 239 MRI scans of the anatomical tracings of lesions after stroke (ATLAS) dataset to evaluate the performance and effectiveness of our method. The experimental results show that the DSC score of the proposed DPAC-UNet network is 6% higher than the single-path attention U-Net. It is also higher than the existing segmentation methods of the related literature. Therefore, our method demonstrates powerful abilities in the application of stroke lesion segmentation.
format Online
Article
Text
id pubmed-8423551
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Hindawi
record_format MEDLINE/PubMed
spelling pubmed-84235512021-09-08 Dual-Path Attention Compensation U-Net for Stroke Lesion Segmentation Hui, Haisheng Zhang, Xueying Wu, Zelin Li, Fenlian Comput Intell Neurosci Research Article For the segmentation task of stroke lesions, using the attention U-Net model based on the self-attention mechanism can suppress irrelevant regions in an input image while highlighting salient features useful for specific tasks. However, when the lesion is small and the lesion contour is blurred, attention U-Net may generate wrong attention coefficient maps, leading to incorrect segmentation results. To cope with this issue, we propose a dual-path attention compensation U-Net (DPAC-UNet) network, which consists of a primary network and auxiliary path network. Both networks are attention U-Net models and identical in structure. The primary path network is the core network that performs accurate lesion segmentation and outputting of the final segmentation result. The auxiliary path network generates auxiliary attention compensation coefficients and sends them to the primary path network to compensate for and correct possible attention coefficient errors. To realize the compensation mechanism of DPAC-UNet, we propose a weighted binary cross-entropy Tversky (WBCE-Tversky) loss to train the primary path network to achieve accurate segmentation and propose another compound loss function called tolerance loss to train the auxiliary path network to generate auxiliary compensation attention coefficient maps with expanded coverage area to perform compensate operations. We conducted segmentation experiments using the 239 MRI scans of the anatomical tracings of lesions after stroke (ATLAS) dataset to evaluate the performance and effectiveness of our method. The experimental results show that the DSC score of the proposed DPAC-UNet network is 6% higher than the single-path attention U-Net. It is also higher than the existing segmentation methods of the related literature. Therefore, our method demonstrates powerful abilities in the application of stroke lesion segmentation. Hindawi 2021-08-31 /pmc/articles/PMC8423551/ /pubmed/34504522 http://dx.doi.org/10.1155/2021/7552185 Text en Copyright © 2021 Haisheng Hui et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Hui, Haisheng
Zhang, Xueying
Wu, Zelin
Li, Fenlian
Dual-Path Attention Compensation U-Net for Stroke Lesion Segmentation
title Dual-Path Attention Compensation U-Net for Stroke Lesion Segmentation
title_full Dual-Path Attention Compensation U-Net for Stroke Lesion Segmentation
title_fullStr Dual-Path Attention Compensation U-Net for Stroke Lesion Segmentation
title_full_unstemmed Dual-Path Attention Compensation U-Net for Stroke Lesion Segmentation
title_short Dual-Path Attention Compensation U-Net for Stroke Lesion Segmentation
title_sort dual-path attention compensation u-net for stroke lesion segmentation
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8423551/
https://www.ncbi.nlm.nih.gov/pubmed/34504522
http://dx.doi.org/10.1155/2021/7552185
work_keys_str_mv AT huihaisheng dualpathattentioncompensationunetforstrokelesionsegmentation
AT zhangxueying dualpathattentioncompensationunetforstrokelesionsegmentation
AT wuzelin dualpathattentioncompensationunetforstrokelesionsegmentation
AT lifenlian dualpathattentioncompensationunetforstrokelesionsegmentation