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Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases
This article describes some use case studies and self-assessments of FAIR status of de.NBI services to illustrate the challenges and requirements for the definition of the needs of adhering to the FAIR (findable, accessible, interoperable and reusable) data principles in a large distributed bioinfor...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8425304/ https://www.ncbi.nlm.nih.gov/pubmed/33589928 http://dx.doi.org/10.1093/bib/bbab010 |
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author | Mayer, Gerhard Müller, Wolfgang Schork, Karin Uszkoreit, Julian Weidemann, Andreas Wittig, Ulrike Rey, Maja Quast, Christian Felden, Janine Glöckner, Frank Oliver Lange, Matthias Arend, Daniel Beier, Sebastian Junker, Astrid Scholz, Uwe Schüler, Danuta Kestler, Hans A Wibberg, Daniel Pühler, Alfred Twardziok, Sven Eils, Jürgen Eils, Roland Hoffmann, Steve Eisenacher, Martin Turewicz, Michael |
author_facet | Mayer, Gerhard Müller, Wolfgang Schork, Karin Uszkoreit, Julian Weidemann, Andreas Wittig, Ulrike Rey, Maja Quast, Christian Felden, Janine Glöckner, Frank Oliver Lange, Matthias Arend, Daniel Beier, Sebastian Junker, Astrid Scholz, Uwe Schüler, Danuta Kestler, Hans A Wibberg, Daniel Pühler, Alfred Twardziok, Sven Eils, Jürgen Eils, Roland Hoffmann, Steve Eisenacher, Martin Turewicz, Michael |
author_sort | Mayer, Gerhard |
collection | PubMed |
description | This article describes some use case studies and self-assessments of FAIR status of de.NBI services to illustrate the challenges and requirements for the definition of the needs of adhering to the FAIR (findable, accessible, interoperable and reusable) data principles in a large distributed bioinformatics infrastructure. We address the challenge of heterogeneity of wet lab technologies, data, metadata, software, computational workflows and the levels of implementation and monitoring of FAIR principles within the different bioinformatics sub-disciplines joint in de.NBI. On the one hand, this broad service landscape and the excellent network of experts are a strong basis for the development of useful research data management plans. On the other hand, the large number of tools and techniques maintained by distributed teams renders FAIR compliance challenging. |
format | Online Article Text |
id | pubmed-8425304 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-84253042021-09-09 Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases Mayer, Gerhard Müller, Wolfgang Schork, Karin Uszkoreit, Julian Weidemann, Andreas Wittig, Ulrike Rey, Maja Quast, Christian Felden, Janine Glöckner, Frank Oliver Lange, Matthias Arend, Daniel Beier, Sebastian Junker, Astrid Scholz, Uwe Schüler, Danuta Kestler, Hans A Wibberg, Daniel Pühler, Alfred Twardziok, Sven Eils, Jürgen Eils, Roland Hoffmann, Steve Eisenacher, Martin Turewicz, Michael Brief Bioinform Case Study This article describes some use case studies and self-assessments of FAIR status of de.NBI services to illustrate the challenges and requirements for the definition of the needs of adhering to the FAIR (findable, accessible, interoperable and reusable) data principles in a large distributed bioinformatics infrastructure. We address the challenge of heterogeneity of wet lab technologies, data, metadata, software, computational workflows and the levels of implementation and monitoring of FAIR principles within the different bioinformatics sub-disciplines joint in de.NBI. On the one hand, this broad service landscape and the excellent network of experts are a strong basis for the development of useful research data management plans. On the other hand, the large number of tools and techniques maintained by distributed teams renders FAIR compliance challenging. Oxford University Press 2021-02-16 /pmc/articles/PMC8425304/ /pubmed/33589928 http://dx.doi.org/10.1093/bib/bbab010 Text en © The Author(s) 2021. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Case Study Mayer, Gerhard Müller, Wolfgang Schork, Karin Uszkoreit, Julian Weidemann, Andreas Wittig, Ulrike Rey, Maja Quast, Christian Felden, Janine Glöckner, Frank Oliver Lange, Matthias Arend, Daniel Beier, Sebastian Junker, Astrid Scholz, Uwe Schüler, Danuta Kestler, Hans A Wibberg, Daniel Pühler, Alfred Twardziok, Sven Eils, Jürgen Eils, Roland Hoffmann, Steve Eisenacher, Martin Turewicz, Michael Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases |
title | Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases |
title_full | Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases |
title_fullStr | Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases |
title_full_unstemmed | Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases |
title_short | Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases |
title_sort | implementing fair data management within the german network for bioinformatics infrastructure (de.nbi) exemplified by selected use cases |
topic | Case Study |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8425304/ https://www.ncbi.nlm.nih.gov/pubmed/33589928 http://dx.doi.org/10.1093/bib/bbab010 |
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