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Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases

This article describes some use case studies and self-assessments of FAIR status of de.NBI services to illustrate the challenges and requirements for the definition of the needs of adhering to the FAIR (findable, accessible, interoperable and reusable) data principles in a large distributed bioinfor...

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Autores principales: Mayer, Gerhard, Müller, Wolfgang, Schork, Karin, Uszkoreit, Julian, Weidemann, Andreas, Wittig, Ulrike, Rey, Maja, Quast, Christian, Felden, Janine, Glöckner, Frank Oliver, Lange, Matthias, Arend, Daniel, Beier, Sebastian, Junker, Astrid, Scholz, Uwe, Schüler, Danuta, Kestler, Hans A, Wibberg, Daniel, Pühler, Alfred, Twardziok, Sven, Eils, Jürgen, Eils, Roland, Hoffmann, Steve, Eisenacher, Martin, Turewicz, Michael
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8425304/
https://www.ncbi.nlm.nih.gov/pubmed/33589928
http://dx.doi.org/10.1093/bib/bbab010
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author Mayer, Gerhard
Müller, Wolfgang
Schork, Karin
Uszkoreit, Julian
Weidemann, Andreas
Wittig, Ulrike
Rey, Maja
Quast, Christian
Felden, Janine
Glöckner, Frank Oliver
Lange, Matthias
Arend, Daniel
Beier, Sebastian
Junker, Astrid
Scholz, Uwe
Schüler, Danuta
Kestler, Hans A
Wibberg, Daniel
Pühler, Alfred
Twardziok, Sven
Eils, Jürgen
Eils, Roland
Hoffmann, Steve
Eisenacher, Martin
Turewicz, Michael
author_facet Mayer, Gerhard
Müller, Wolfgang
Schork, Karin
Uszkoreit, Julian
Weidemann, Andreas
Wittig, Ulrike
Rey, Maja
Quast, Christian
Felden, Janine
Glöckner, Frank Oliver
Lange, Matthias
Arend, Daniel
Beier, Sebastian
Junker, Astrid
Scholz, Uwe
Schüler, Danuta
Kestler, Hans A
Wibberg, Daniel
Pühler, Alfred
Twardziok, Sven
Eils, Jürgen
Eils, Roland
Hoffmann, Steve
Eisenacher, Martin
Turewicz, Michael
author_sort Mayer, Gerhard
collection PubMed
description This article describes some use case studies and self-assessments of FAIR status of de.NBI services to illustrate the challenges and requirements for the definition of the needs of adhering to the FAIR (findable, accessible, interoperable and reusable) data principles in a large distributed bioinformatics infrastructure. We address the challenge of heterogeneity of wet lab technologies, data, metadata, software, computational workflows and the levels of implementation and monitoring of FAIR principles within the different bioinformatics sub-disciplines joint in de.NBI. On the one hand, this broad service landscape and the excellent network of experts are a strong basis for the development of useful research data management plans. On the other hand, the large number of tools and techniques maintained by distributed teams renders FAIR compliance challenging.
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spelling pubmed-84253042021-09-09 Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases Mayer, Gerhard Müller, Wolfgang Schork, Karin Uszkoreit, Julian Weidemann, Andreas Wittig, Ulrike Rey, Maja Quast, Christian Felden, Janine Glöckner, Frank Oliver Lange, Matthias Arend, Daniel Beier, Sebastian Junker, Astrid Scholz, Uwe Schüler, Danuta Kestler, Hans A Wibberg, Daniel Pühler, Alfred Twardziok, Sven Eils, Jürgen Eils, Roland Hoffmann, Steve Eisenacher, Martin Turewicz, Michael Brief Bioinform Case Study This article describes some use case studies and self-assessments of FAIR status of de.NBI services to illustrate the challenges and requirements for the definition of the needs of adhering to the FAIR (findable, accessible, interoperable and reusable) data principles in a large distributed bioinformatics infrastructure. We address the challenge of heterogeneity of wet lab technologies, data, metadata, software, computational workflows and the levels of implementation and monitoring of FAIR principles within the different bioinformatics sub-disciplines joint in de.NBI. On the one hand, this broad service landscape and the excellent network of experts are a strong basis for the development of useful research data management plans. On the other hand, the large number of tools and techniques maintained by distributed teams renders FAIR compliance challenging. Oxford University Press 2021-02-16 /pmc/articles/PMC8425304/ /pubmed/33589928 http://dx.doi.org/10.1093/bib/bbab010 Text en © The Author(s) 2021. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Case Study
Mayer, Gerhard
Müller, Wolfgang
Schork, Karin
Uszkoreit, Julian
Weidemann, Andreas
Wittig, Ulrike
Rey, Maja
Quast, Christian
Felden, Janine
Glöckner, Frank Oliver
Lange, Matthias
Arend, Daniel
Beier, Sebastian
Junker, Astrid
Scholz, Uwe
Schüler, Danuta
Kestler, Hans A
Wibberg, Daniel
Pühler, Alfred
Twardziok, Sven
Eils, Jürgen
Eils, Roland
Hoffmann, Steve
Eisenacher, Martin
Turewicz, Michael
Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases
title Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases
title_full Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases
title_fullStr Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases
title_full_unstemmed Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases
title_short Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases
title_sort implementing fair data management within the german network for bioinformatics infrastructure (de.nbi) exemplified by selected use cases
topic Case Study
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8425304/
https://www.ncbi.nlm.nih.gov/pubmed/33589928
http://dx.doi.org/10.1093/bib/bbab010
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