Cargando…

A Novel Network-Based Algorithm for Predicting Protein-Protein Interactions Using Gene Ontology

Proteins are one of most significant components in living organism, and their main role in cells is to undertake various physiological functions by interacting with each other. Thus, the prediction of protein-protein interactions (PPIs) is crucial for understanding the molecular basis of biological...

Descripción completa

Detalles Bibliográficos
Autores principales:	Hu, Lun, Wang, Xiaojuan, Huang, Yu-An, Hu, Pengwei, You, Zhu-Hong
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2021
Materias:	Microbiology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8425590/ https://www.ncbi.nlm.nih.gov/pubmed/34512614 http://dx.doi.org/10.3389/fmicb.2021.735329

Ejemplares similares

Prediction of yeast protein–protein interaction network: insights from the Gene Ontology and annotations
por: Wu, Xiaomei, et al.
Publicado: (2006)

Predicting Protein-Protein Interactions from Primary Protein Sequences Using a Novel Multi-Scale Local Feature Representation Scheme and the Random Forest
por: You, Zhu-Hong, et al.
Publicado: (2015)

Literature Mining and Ontology based Analysis of Host-Brucella Gene–Gene Interaction Network
por: Karadeniz, İlknur, et al.
Publicado: (2015)

Multi-view heterogeneous molecular network representation learning for protein–protein interaction prediction
por: Su, Xiao-Rui, et al.
Publicado: (2022)

Graph embeddings on gene ontology annotations for protein–protein interaction prediction
por: Zhong, Xiaoshi, et al.
Publicado: (2020)

The use of Gene Ontology terms for predicting highly-connected 'hub' nodes in protein-protein interaction networks
por: Hsing, Michael, et al.
Publicado: (2008)

Using indirect protein interactions for the prediction of Gene Ontology functions
por: Chua, Hon Nian, et al.
Publicado: (2007)

Predicting gene ontology annotations of orphan GWAS genes using protein-protein interactions
por: Kuppuswamy, Usha, et al.
Publicado: (2014)

Gene Ontology Function prediction in Mollicutes using Protein-Protein Association Networks
por: Gómez, Antonio, et al.
Publicado: (2011)

Ontology integration to identify protein complex in protein interaction networks
por: Xu, Bo, et al.
Publicado: (2011)

False positive reduction in protein-protein interaction predictions using gene ontology annotations
por: Mahdavi, Mahmoud A, et al.
Publicado: (2007)

Protein-Protein Interactions Prediction Based on Iterative Clique Extension with Gene Ontology Filtering
por: Yang, Lei, et al.
Publicado: (2014)

Ontological visualization of protein-protein interactions
por: Drabkin, Harold J, et al.
Publicado: (2005)

Integration of anatomy ontology data with protein–protein interaction networks improves the candidate gene prediction accuracy for anatomical entities
por: Fernando, Pasan C., et al.
Publicado: (2020)

Systematically characterizing and prioritizing chemosensitivity related gene based on Gene Ontology and protein interaction network
por: Chen, Xin, et al.
Publicado: (2012)

Filtering Gene Ontology semantic similarity for identifying protein complexes in large protein interaction networks
por: Wang, Jian, et al.
Publicado: (2012)

Computational algorithms to predict Gene Ontology annotations
por: Pinoli, Pietro, et al.
Publicado: (2015)

InfersentPPI: Prediction of Protein-Protein Interaction Using Protein Sentence Embedding With Gene Ontology Information
por: Li, Meijing, et al.
Publicado: (2022)

Integrating unsupervised language model with triplet neural networks for protein gene ontology prediction
por: Zhu, Yi-Heng, et al.
Publicado: (2022)

In silico Prediction of Protein–Protein Interaction Network Induced by Manganese II in Meyerozyma guilliermondii
por: Ruas, France Anne Dias, et al.
Publicado: (2020)

Prediction of anti-microtubular target proteins of tubulins and their interacting proteins using Gene Ontology tools
por: Ramesh Babu, Polani B.
Publicado: (2023)

Inferring Novel Tumor Suppressor Genes with a Protein-Protein Interaction Network and Network Diffusion Algorithms
por: Chen, Lei, et al.
Publicado: (2018)

Construction of Ontology Augmented Networks for Protein Complex Prediction
por: Zhang, Yijia, et al.
Publicado: (2013)

Gene Ontology consistent protein function prediction: the FALCON algorithm applied to six eukaryotic genomes
por: Kourmpetis, Yiannis AI, et al.
Publicado: (2013)

NNTox: Gene Ontology-Based Protein Toxicity Prediction Using Neural Network
por: Jain, Aashish, et al.
Publicado: (2019)

Identification of protein–protein interaction associated functions based on gene ontology and KEGG pathway
por: Yang, Lili, et al.
Publicado: (2022)

Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression
por: De Bodt, Stefanie, et al.
Publicado: (2009)

TransformerGO: predicting protein–protein interactions by modelling the attention between sets of gene ontology terms
por: Ieremie, Ioan, et al.
Publicado: (2022)

The protein-protein interaction ontology: for better representing and capturing the biological context of protein interaction
por: Li, Mansheng, et al.
Publicado: (2021)

HKC: An Algorithm to Predict Protein Complexes in Protein-Protein Interaction Networks
por: Wang, Xiaomin, et al.
Publicado: (2011)

An Efficient Computational Model for Large-Scale Prediction of Protein–Protein Interactions Based on Accurate and Scalable Graph Embedding
por: Su, Xiao-Rui, et al.
Publicado: (2021)

Developing a Protein-Interactions Ontology
por: Ratsch, Esther, et al.
Publicado: (2003)

An ontology-based search engine for protein-protein interactions
por: Park, Byungkyu, et al.
Publicado: (2010)

t-LSE: A Novel Robust Geometric Approach for Modeling Protein-Protein Interaction Networks
por: Zhu, Lin, et al.
Publicado: (2013)

Predicting Protein Phenotypes Based on Protein-Protein Interaction Network
por: Hu, Lele, et al.
Publicado: (2011)

Protein Ontology: a controlled structured network of protein entities
por: Natale, Darren A., et al.
Publicado: (2014)

PoGO: Prediction of Gene Ontology terms for fungal proteins
por: Jung, Jaehee, et al.
Publicado: (2010)

Annotating activation/inhibition relationships to protein-protein interactions using gene ontology relations
por: Yim, Soorin, et al.
Publicado: (2018)

NETWORKED 3B: a novel protein in the actin cytoskeleton-endoplasmic reticulum interaction
por: Wang, Pengwei, et al.
Publicado: (2017)

A supervised protein complex prediction method with network representation learning and gene ontology knowledge
por: Wang, Xiaoxu, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_uuccr5h54jc3jbhi38alf4ogfe