Cargando…

The complete chloroplast genome sequence of Ziziphus attopensis (Rhamnaceae) and its phylogenetic analysis

Ziziphus attopensis has high medicinal value of tonic, carminative, appetizer, and muscle analgesic. To provide genetic information for further research and conservation, the complete chloroplast genome sequence of Z. attopensis was determined in this study. The genome was 161,342 bp in length, cons...

Descripción completa

Detalles Bibliográficos
Autor principal: Li, Jia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8425640/
https://www.ncbi.nlm.nih.gov/pubmed/34514142
http://dx.doi.org/10.1080/23802359.2021.1915716
_version_ 1783749881783910400
author Li, Jia
author_facet Li, Jia
author_sort Li, Jia
collection PubMed
description Ziziphus attopensis has high medicinal value of tonic, carminative, appetizer, and muscle analgesic. To provide genetic information for further research and conservation, the complete chloroplast genome sequence of Z. attopensis was determined in this study. The genome was 161,342 bp in length, consisting of a large single copy region (89,035 bp), a small single copy region (19,421 bp), and a pair of inverted repeat regions (26,443 bp). In total, 129 genes were identified in Z. attopensis chloroplast genome, including 85 protein coding genes, eight rRNA, and 36 tRNA genes. Maximum-likelihood tree inferred from 58-gene sequences of 20 taxa supported that Rhamnaceae is sister to Elaeagnaceae and Z. attopensis is more closely related to Ziziphus jujuba.
format Online
Article
Text
id pubmed-8425640
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-84256402021-09-09 The complete chloroplast genome sequence of Ziziphus attopensis (Rhamnaceae) and its phylogenetic analysis Li, Jia Mitochondrial DNA B Resour Mitogenome Announcement Ziziphus attopensis has high medicinal value of tonic, carminative, appetizer, and muscle analgesic. To provide genetic information for further research and conservation, the complete chloroplast genome sequence of Z. attopensis was determined in this study. The genome was 161,342 bp in length, consisting of a large single copy region (89,035 bp), a small single copy region (19,421 bp), and a pair of inverted repeat regions (26,443 bp). In total, 129 genes were identified in Z. attopensis chloroplast genome, including 85 protein coding genes, eight rRNA, and 36 tRNA genes. Maximum-likelihood tree inferred from 58-gene sequences of 20 taxa supported that Rhamnaceae is sister to Elaeagnaceae and Z. attopensis is more closely related to Ziziphus jujuba. Taylor & Francis 2021-09-02 /pmc/articles/PMC8425640/ /pubmed/34514142 http://dx.doi.org/10.1080/23802359.2021.1915716 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Li, Jia
The complete chloroplast genome sequence of Ziziphus attopensis (Rhamnaceae) and its phylogenetic analysis
title The complete chloroplast genome sequence of Ziziphus attopensis (Rhamnaceae) and its phylogenetic analysis
title_full The complete chloroplast genome sequence of Ziziphus attopensis (Rhamnaceae) and its phylogenetic analysis
title_fullStr The complete chloroplast genome sequence of Ziziphus attopensis (Rhamnaceae) and its phylogenetic analysis
title_full_unstemmed The complete chloroplast genome sequence of Ziziphus attopensis (Rhamnaceae) and its phylogenetic analysis
title_short The complete chloroplast genome sequence of Ziziphus attopensis (Rhamnaceae) and its phylogenetic analysis
title_sort complete chloroplast genome sequence of ziziphus attopensis (rhamnaceae) and its phylogenetic analysis
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8425640/
https://www.ncbi.nlm.nih.gov/pubmed/34514142
http://dx.doi.org/10.1080/23802359.2021.1915716
work_keys_str_mv AT lijia thecompletechloroplastgenomesequenceofziziphusattopensisrhamnaceaeanditsphylogeneticanalysis
AT lijia completechloroplastgenomesequenceofziziphusattopensisrhamnaceaeanditsphylogeneticanalysis