Cargando…
The complete chloroplast genome sequence of Ziziphus attopensis (Rhamnaceae) and its phylogenetic analysis
Ziziphus attopensis has high medicinal value of tonic, carminative, appetizer, and muscle analgesic. To provide genetic information for further research and conservation, the complete chloroplast genome sequence of Z. attopensis was determined in this study. The genome was 161,342 bp in length, cons...
Autor principal: | |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8425640/ https://www.ncbi.nlm.nih.gov/pubmed/34514142 http://dx.doi.org/10.1080/23802359.2021.1915716 |
_version_ | 1783749881783910400 |
---|---|
author | Li, Jia |
author_facet | Li, Jia |
author_sort | Li, Jia |
collection | PubMed |
description | Ziziphus attopensis has high medicinal value of tonic, carminative, appetizer, and muscle analgesic. To provide genetic information for further research and conservation, the complete chloroplast genome sequence of Z. attopensis was determined in this study. The genome was 161,342 bp in length, consisting of a large single copy region (89,035 bp), a small single copy region (19,421 bp), and a pair of inverted repeat regions (26,443 bp). In total, 129 genes were identified in Z. attopensis chloroplast genome, including 85 protein coding genes, eight rRNA, and 36 tRNA genes. Maximum-likelihood tree inferred from 58-gene sequences of 20 taxa supported that Rhamnaceae is sister to Elaeagnaceae and Z. attopensis is more closely related to Ziziphus jujuba. |
format | Online Article Text |
id | pubmed-8425640 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-84256402021-09-09 The complete chloroplast genome sequence of Ziziphus attopensis (Rhamnaceae) and its phylogenetic analysis Li, Jia Mitochondrial DNA B Resour Mitogenome Announcement Ziziphus attopensis has high medicinal value of tonic, carminative, appetizer, and muscle analgesic. To provide genetic information for further research and conservation, the complete chloroplast genome sequence of Z. attopensis was determined in this study. The genome was 161,342 bp in length, consisting of a large single copy region (89,035 bp), a small single copy region (19,421 bp), and a pair of inverted repeat regions (26,443 bp). In total, 129 genes were identified in Z. attopensis chloroplast genome, including 85 protein coding genes, eight rRNA, and 36 tRNA genes. Maximum-likelihood tree inferred from 58-gene sequences of 20 taxa supported that Rhamnaceae is sister to Elaeagnaceae and Z. attopensis is more closely related to Ziziphus jujuba. Taylor & Francis 2021-09-02 /pmc/articles/PMC8425640/ /pubmed/34514142 http://dx.doi.org/10.1080/23802359.2021.1915716 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Li, Jia The complete chloroplast genome sequence of Ziziphus attopensis (Rhamnaceae) and its phylogenetic analysis |
title | The complete chloroplast genome sequence of Ziziphus attopensis (Rhamnaceae) and its phylogenetic analysis |
title_full | The complete chloroplast genome sequence of Ziziphus attopensis (Rhamnaceae) and its phylogenetic analysis |
title_fullStr | The complete chloroplast genome sequence of Ziziphus attopensis (Rhamnaceae) and its phylogenetic analysis |
title_full_unstemmed | The complete chloroplast genome sequence of Ziziphus attopensis (Rhamnaceae) and its phylogenetic analysis |
title_short | The complete chloroplast genome sequence of Ziziphus attopensis (Rhamnaceae) and its phylogenetic analysis |
title_sort | complete chloroplast genome sequence of ziziphus attopensis (rhamnaceae) and its phylogenetic analysis |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8425640/ https://www.ncbi.nlm.nih.gov/pubmed/34514142 http://dx.doi.org/10.1080/23802359.2021.1915716 |
work_keys_str_mv | AT lijia thecompletechloroplastgenomesequenceofziziphusattopensisrhamnaceaeanditsphylogeneticanalysis AT lijia completechloroplastgenomesequenceofziziphusattopensisrhamnaceaeanditsphylogeneticanalysis |