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A depthwise separable dense convolutional network with convolution block attention module for COVID-19 diagnosis on CT scans

Coronavirus disease 2019 (COVID-19) has caused more than 3 million deaths and infected more than 170 million individuals all over the world. Rapid identification of patients with COVID-19 is the key to control transmission and prevent depletion of hospitals. Several networks have been proposed to as...

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Autores principales: Li, Qian, Ning, Jiangbo, Yuan, Jianping, Xiao, Ling
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Ltd. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8425669/
https://www.ncbi.nlm.nih.gov/pubmed/34530335
http://dx.doi.org/10.1016/j.compbiomed.2021.104837
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author Li, Qian
Ning, Jiangbo
Yuan, Jianping
Xiao, Ling
author_facet Li, Qian
Ning, Jiangbo
Yuan, Jianping
Xiao, Ling
author_sort Li, Qian
collection PubMed
description Coronavirus disease 2019 (COVID-19) has caused more than 3 million deaths and infected more than 170 million individuals all over the world. Rapid identification of patients with COVID-19 is the key to control transmission and prevent depletion of hospitals. Several networks have been proposed to assist radiologists in diagnosing COVID-19 based on CT scans. However, CTs used in these studies are unavailable for other researchers to do deeper extensions due to privacy concerns. Furthermore, these networks are too heavy-weighted to satisfy the general trend applying on a computationally limited platform. In this paper, we aim to solve these two problems. Firstly, we establish an available dataset COVID-CTx, which contains 828 CT scans positive for COVID-19 across 324 patient cases from three open access data repositories. To our knowledge, it has the largest number of publicly available COVID-19 positive cases compared to other public datasets. Secondly, we propose a light-weighted hybrid neural network: Depthwise Separable Dense Convolutional Network with Convolution Block Attention Module (AM-SdenseNet). AM-SdenseNet synergistically integrates Convolutional Block Attention Module with depthwise separable convolutions to learn powerful feature representations while reducing the parameters to overcome the overfitting problem. Through experiments, we demonstrate the superior performance of our proposed AM-SdenseNet compared with several state-of-the-art baselines. The excellent performance of AM-SdenseNet can improve the speed and accuracy of COVID-19 diagnosis, which is extremely useful to control the spreading of infection.
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spelling pubmed-84256692021-09-09 A depthwise separable dense convolutional network with convolution block attention module for COVID-19 diagnosis on CT scans Li, Qian Ning, Jiangbo Yuan, Jianping Xiao, Ling Comput Biol Med Article Coronavirus disease 2019 (COVID-19) has caused more than 3 million deaths and infected more than 170 million individuals all over the world. Rapid identification of patients with COVID-19 is the key to control transmission and prevent depletion of hospitals. Several networks have been proposed to assist radiologists in diagnosing COVID-19 based on CT scans. However, CTs used in these studies are unavailable for other researchers to do deeper extensions due to privacy concerns. Furthermore, these networks are too heavy-weighted to satisfy the general trend applying on a computationally limited platform. In this paper, we aim to solve these two problems. Firstly, we establish an available dataset COVID-CTx, which contains 828 CT scans positive for COVID-19 across 324 patient cases from three open access data repositories. To our knowledge, it has the largest number of publicly available COVID-19 positive cases compared to other public datasets. Secondly, we propose a light-weighted hybrid neural network: Depthwise Separable Dense Convolutional Network with Convolution Block Attention Module (AM-SdenseNet). AM-SdenseNet synergistically integrates Convolutional Block Attention Module with depthwise separable convolutions to learn powerful feature representations while reducing the parameters to overcome the overfitting problem. Through experiments, we demonstrate the superior performance of our proposed AM-SdenseNet compared with several state-of-the-art baselines. The excellent performance of AM-SdenseNet can improve the speed and accuracy of COVID-19 diagnosis, which is extremely useful to control the spreading of infection. Elsevier Ltd. 2021-10 2021-09-08 /pmc/articles/PMC8425669/ /pubmed/34530335 http://dx.doi.org/10.1016/j.compbiomed.2021.104837 Text en © 2021 Elsevier Ltd. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Li, Qian
Ning, Jiangbo
Yuan, Jianping
Xiao, Ling
A depthwise separable dense convolutional network with convolution block attention module for COVID-19 diagnosis on CT scans
title A depthwise separable dense convolutional network with convolution block attention module for COVID-19 diagnosis on CT scans
title_full A depthwise separable dense convolutional network with convolution block attention module for COVID-19 diagnosis on CT scans
title_fullStr A depthwise separable dense convolutional network with convolution block attention module for COVID-19 diagnosis on CT scans
title_full_unstemmed A depthwise separable dense convolutional network with convolution block attention module for COVID-19 diagnosis on CT scans
title_short A depthwise separable dense convolutional network with convolution block attention module for COVID-19 diagnosis on CT scans
title_sort depthwise separable dense convolutional network with convolution block attention module for covid-19 diagnosis on ct scans
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8425669/
https://www.ncbi.nlm.nih.gov/pubmed/34530335
http://dx.doi.org/10.1016/j.compbiomed.2021.104837
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