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The complete chloroplast genome sequence of Arundo formosana Hack. (Poaceae)
Arundo formosana Hack. belongs to the Arundionideae subfamily of Poaceae. In this study, we sequenced and assembled the complete chloroplast genome of A. formosana. The complete chloroplast genome was 136,919 bp in size, including a large single copy region of 82,039 bp, a small single-copy region o...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8425696/ https://www.ncbi.nlm.nih.gov/pubmed/34514139 http://dx.doi.org/10.1080/23802359.2021.1972865 |
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author | Feng, Li-Ying Shi, Chao Gao, Li-Zhi |
author_facet | Feng, Li-Ying Shi, Chao Gao, Li-Zhi |
author_sort | Feng, Li-Ying |
collection | PubMed |
description | Arundo formosana Hack. belongs to the Arundionideae subfamily of Poaceae. In this study, we sequenced and assembled the complete chloroplast genome of A. formosana. The complete chloroplast genome was 136,919 bp in size, including a large single copy region of 82,039 bp, a small single-copy region of 12,108 bp and a pair of reverse repeats of 21,386 bp in size. The annotation of A. formosana indicates that it contained 81 protein-coding genes, 47 tRNA and 8 rRNA. Our phylogenetic analysis of the 36 grass complete chroloplast genomes of protein-coding genes using Cyperus rotundus as outgroup showed that A. formosana is closely related to Crinipes species to form the Arundionideae lineage of the grass family. |
format | Online Article Text |
id | pubmed-8425696 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-84256962021-09-09 The complete chloroplast genome sequence of Arundo formosana Hack. (Poaceae) Feng, Li-Ying Shi, Chao Gao, Li-Zhi Mitochondrial DNA B Resour Mitogenome Announcement Arundo formosana Hack. belongs to the Arundionideae subfamily of Poaceae. In this study, we sequenced and assembled the complete chloroplast genome of A. formosana. The complete chloroplast genome was 136,919 bp in size, including a large single copy region of 82,039 bp, a small single-copy region of 12,108 bp and a pair of reverse repeats of 21,386 bp in size. The annotation of A. formosana indicates that it contained 81 protein-coding genes, 47 tRNA and 8 rRNA. Our phylogenetic analysis of the 36 grass complete chroloplast genomes of protein-coding genes using Cyperus rotundus as outgroup showed that A. formosana is closely related to Crinipes species to form the Arundionideae lineage of the grass family. Taylor & Francis 2021-08-31 /pmc/articles/PMC8425696/ /pubmed/34514139 http://dx.doi.org/10.1080/23802359.2021.1972865 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Feng, Li-Ying Shi, Chao Gao, Li-Zhi The complete chloroplast genome sequence of Arundo formosana Hack. (Poaceae) |
title | The complete chloroplast genome sequence of Arundo formosana Hack. (Poaceae) |
title_full | The complete chloroplast genome sequence of Arundo formosana Hack. (Poaceae) |
title_fullStr | The complete chloroplast genome sequence of Arundo formosana Hack. (Poaceae) |
title_full_unstemmed | The complete chloroplast genome sequence of Arundo formosana Hack. (Poaceae) |
title_short | The complete chloroplast genome sequence of Arundo formosana Hack. (Poaceae) |
title_sort | complete chloroplast genome sequence of arundo formosana hack. (poaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8425696/ https://www.ncbi.nlm.nih.gov/pubmed/34514139 http://dx.doi.org/10.1080/23802359.2021.1972865 |
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