Characterization and phylogenetic analysis of the complete chloroplast genome of Ilex rotunda, traditional Chinese medicine plant

Ilex rotunda is a traditional Chinese medicine plant. In this study, we characterized the complete chloroplast (cp) genome sequence of I. rotunda to investigate its phylogenetic relationship. The cp genome of I. rotunda was 157,743 bp in length with 37.62% overall GC content, including a large singl...

Descripción completa

Detalles Bibliográficos
Autores principales: Chen, Hong, Chong, Xinran, Zhou, Yanwei, Sun, Linhe, Zhang, Fan, Lu, Xiaoqing, Li, Naiwei, Zhou, Ting, Li, Yunlong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8425722/
https://www.ncbi.nlm.nih.gov/pubmed/34514128
http://dx.doi.org/10.1080/23802359.2021.1967804
_version_ 1783749893323489280
author Chen, Hong
Chong, Xinran
Zhou, Yanwei
Sun, Linhe
Zhang, Fan
Lu, Xiaoqing
Li, Naiwei
Zhou, Ting
Li, Yunlong
author_facet Chen, Hong
Chong, Xinran
Zhou, Yanwei
Sun, Linhe
Zhang, Fan
Lu, Xiaoqing
Li, Naiwei
Zhou, Ting
Li, Yunlong
author_sort Chen, Hong
collection PubMed
description Ilex rotunda is a traditional Chinese medicine plant. In this study, we characterized the complete chloroplast (cp) genome sequence of I. rotunda to investigate its phylogenetic relationship. The cp genome of I. rotunda was 157,743 bp in length with 37.62% overall GC content, including a large single-copy (LSC) region of 87,060bp, a small single-copy (SSC) region of 18,432 bp, which were separated by a pair of inverted repeats (IRS) of 26,121 bp. The cp genome contained 133 genes, including 88 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Phylogenetic analysis based on whole cp genome sequences showed that I. rotunda is closely related to I. pubescens and I. polyneura.
format Online
Article
Text
id pubmed-8425722
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-84257222021-09-09 Characterization and phylogenetic analysis of the complete chloroplast genome of Ilex rotunda, traditional Chinese medicine plant Chen, Hong Chong, Xinran Zhou, Yanwei Sun, Linhe Zhang, Fan Lu, Xiaoqing Li, Naiwei Zhou, Ting Li, Yunlong Mitochondrial DNA B Resour Mitogenome Announcement Ilex rotunda is a traditional Chinese medicine plant. In this study, we characterized the complete chloroplast (cp) genome sequence of I. rotunda to investigate its phylogenetic relationship. The cp genome of I. rotunda was 157,743 bp in length with 37.62% overall GC content, including a large single-copy (LSC) region of 87,060bp, a small single-copy (SSC) region of 18,432 bp, which were separated by a pair of inverted repeats (IRS) of 26,121 bp. The cp genome contained 133 genes, including 88 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Phylogenetic analysis based on whole cp genome sequences showed that I. rotunda is closely related to I. pubescens and I. polyneura. Taylor & Francis 2021-08-31 /pmc/articles/PMC8425722/ /pubmed/34514128 http://dx.doi.org/10.1080/23802359.2021.1967804 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Chen, Hong
Chong, Xinran
Zhou, Yanwei
Sun, Linhe
Zhang, Fan
Lu, Xiaoqing
Li, Naiwei
Zhou, Ting
Li, Yunlong
Characterization and phylogenetic analysis of the complete chloroplast genome of Ilex rotunda, traditional Chinese medicine plant
title Characterization and phylogenetic analysis of the complete chloroplast genome of Ilex rotunda, traditional Chinese medicine plant
title_full Characterization and phylogenetic analysis of the complete chloroplast genome of Ilex rotunda, traditional Chinese medicine plant
title_fullStr Characterization and phylogenetic analysis of the complete chloroplast genome of Ilex rotunda, traditional Chinese medicine plant
title_full_unstemmed Characterization and phylogenetic analysis of the complete chloroplast genome of Ilex rotunda, traditional Chinese medicine plant
title_short Characterization and phylogenetic analysis of the complete chloroplast genome of Ilex rotunda, traditional Chinese medicine plant
title_sort characterization and phylogenetic analysis of the complete chloroplast genome of ilex rotunda, traditional chinese medicine plant
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8425722/
https://www.ncbi.nlm.nih.gov/pubmed/34514128
http://dx.doi.org/10.1080/23802359.2021.1967804
work_keys_str_mv AT chenhong characterizationandphylogeneticanalysisofthecompletechloroplastgenomeofilexrotundatraditionalchinesemedicineplant
AT chongxinran characterizationandphylogeneticanalysisofthecompletechloroplastgenomeofilexrotundatraditionalchinesemedicineplant
AT zhouyanwei characterizationandphylogeneticanalysisofthecompletechloroplastgenomeofilexrotundatraditionalchinesemedicineplant
AT sunlinhe characterizationandphylogeneticanalysisofthecompletechloroplastgenomeofilexrotundatraditionalchinesemedicineplant
AT zhangfan characterizationandphylogeneticanalysisofthecompletechloroplastgenomeofilexrotundatraditionalchinesemedicineplant
AT luxiaoqing characterizationandphylogeneticanalysisofthecompletechloroplastgenomeofilexrotundatraditionalchinesemedicineplant
AT linaiwei characterizationandphylogeneticanalysisofthecompletechloroplastgenomeofilexrotundatraditionalchinesemedicineplant
AT zhouting characterizationandphylogeneticanalysisofthecompletechloroplastgenomeofilexrotundatraditionalchinesemedicineplant
AT liyunlong characterizationandphylogeneticanalysisofthecompletechloroplastgenomeofilexrotundatraditionalchinesemedicineplant

Ejemplares similares