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The complete mitochondrial genome of Poropanchax normani and phylogenetic studies of Cyprinodontidaes
The complete mitochondrial genome of the Cyprinodontiformes fish Poropanchax normani was studied in this study. The size of the entire mitochondrial genome was 16,878 bp, and the total length of the encoding sequence was 11,435 bp, accounting for 67.75%, encoding 3800 amino acids in total. Genome ba...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8425730/ https://www.ncbi.nlm.nih.gov/pubmed/34514130 http://dx.doi.org/10.1080/23802359.2021.1970633 |
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author | Ren, Chuanchen Zhao, Xinyu Meng, Fang Liu, Yifan Wang, Hongqiang Zhang, Kun Liu, Bingjian Yang, Enshang |
author_facet | Ren, Chuanchen Zhao, Xinyu Meng, Fang Liu, Yifan Wang, Hongqiang Zhang, Kun Liu, Bingjian Yang, Enshang |
author_sort | Ren, Chuanchen |
collection | PubMed |
description | The complete mitochondrial genome of the Cyprinodontiformes fish Poropanchax normani was studied in this study. The size of the entire mitochondrial genome was 16,878 bp, and the total length of the encoding sequence was 11,435 bp, accounting for 67.75%, encoding 3800 amino acids in total. Genome base compositions were: A was 27.30%, C was 28.30%, G was 16.17%, and T was 28.23%. ND2 and CO1 started with GTG, and other protein-coding genes started with ATG. ND1, ND2, and ND3 ended with TAG, respectively, CO2 and ND4 ended with a single T, and other PCGS ended with TAA. The ribosomal RNA lengths of 12S and 16S were 950 bp and 1690 bp, respectively. The control area (D-loop) was 1194 bp in size and ranged from 15,685 to 16,878 bp. It showed negative GC skew value (–0.2728) and negative AT skewness (–0.0168). Phylogenetic analysis showed that P. normani was most closely related to Xenotoca eiseni. The complete sequence of the mitochondrial genome will provide a new perspective for classification and help to draw a more complete picture of species diversity within the Cyprinodontiformes. |
format | Online Article Text |
id | pubmed-8425730 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-84257302021-09-09 The complete mitochondrial genome of Poropanchax normani and phylogenetic studies of Cyprinodontidaes Ren, Chuanchen Zhao, Xinyu Meng, Fang Liu, Yifan Wang, Hongqiang Zhang, Kun Liu, Bingjian Yang, Enshang Mitochondrial DNA B Resour Mitogenome Announcement The complete mitochondrial genome of the Cyprinodontiformes fish Poropanchax normani was studied in this study. The size of the entire mitochondrial genome was 16,878 bp, and the total length of the encoding sequence was 11,435 bp, accounting for 67.75%, encoding 3800 amino acids in total. Genome base compositions were: A was 27.30%, C was 28.30%, G was 16.17%, and T was 28.23%. ND2 and CO1 started with GTG, and other protein-coding genes started with ATG. ND1, ND2, and ND3 ended with TAG, respectively, CO2 and ND4 ended with a single T, and other PCGS ended with TAA. The ribosomal RNA lengths of 12S and 16S were 950 bp and 1690 bp, respectively. The control area (D-loop) was 1194 bp in size and ranged from 15,685 to 16,878 bp. It showed negative GC skew value (–0.2728) and negative AT skewness (–0.0168). Phylogenetic analysis showed that P. normani was most closely related to Xenotoca eiseni. The complete sequence of the mitochondrial genome will provide a new perspective for classification and help to draw a more complete picture of species diversity within the Cyprinodontiformes. Taylor & Francis 2021-08-31 /pmc/articles/PMC8425730/ /pubmed/34514130 http://dx.doi.org/10.1080/23802359.2021.1970633 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Ren, Chuanchen Zhao, Xinyu Meng, Fang Liu, Yifan Wang, Hongqiang Zhang, Kun Liu, Bingjian Yang, Enshang The complete mitochondrial genome of Poropanchax normani and phylogenetic studies of Cyprinodontidaes |
title | The complete mitochondrial genome of Poropanchax normani and phylogenetic studies of Cyprinodontidaes |
title_full | The complete mitochondrial genome of Poropanchax normani and phylogenetic studies of Cyprinodontidaes |
title_fullStr | The complete mitochondrial genome of Poropanchax normani and phylogenetic studies of Cyprinodontidaes |
title_full_unstemmed | The complete mitochondrial genome of Poropanchax normani and phylogenetic studies of Cyprinodontidaes |
title_short | The complete mitochondrial genome of Poropanchax normani and phylogenetic studies of Cyprinodontidaes |
title_sort | complete mitochondrial genome of poropanchax normani and phylogenetic studies of cyprinodontidaes |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8425730/ https://www.ncbi.nlm.nih.gov/pubmed/34514130 http://dx.doi.org/10.1080/23802359.2021.1970633 |
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