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The complete mitochondrial genome of Poropanchax normani and phylogenetic studies of Cyprinodontidaes

The complete mitochondrial genome of the Cyprinodontiformes fish Poropanchax normani was studied in this study. The size of the entire mitochondrial genome was 16,878 bp, and the total length of the encoding sequence was 11,435 bp, accounting for 67.75%, encoding 3800 amino acids in total. Genome ba...

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Autores principales: Ren, Chuanchen, Zhao, Xinyu, Meng, Fang, Liu, Yifan, Wang, Hongqiang, Zhang, Kun, Liu, Bingjian, Yang, Enshang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8425730/
https://www.ncbi.nlm.nih.gov/pubmed/34514130
http://dx.doi.org/10.1080/23802359.2021.1970633
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author Ren, Chuanchen
Zhao, Xinyu
Meng, Fang
Liu, Yifan
Wang, Hongqiang
Zhang, Kun
Liu, Bingjian
Yang, Enshang
author_facet Ren, Chuanchen
Zhao, Xinyu
Meng, Fang
Liu, Yifan
Wang, Hongqiang
Zhang, Kun
Liu, Bingjian
Yang, Enshang
author_sort Ren, Chuanchen
collection PubMed
description The complete mitochondrial genome of the Cyprinodontiformes fish Poropanchax normani was studied in this study. The size of the entire mitochondrial genome was 16,878 bp, and the total length of the encoding sequence was 11,435 bp, accounting for 67.75%, encoding 3800 amino acids in total. Genome base compositions were: A was 27.30%, C was 28.30%, G was 16.17%, and T was 28.23%. ND2 and CO1 started with GTG, and other protein-coding genes started with ATG. ND1, ND2, and ND3 ended with TAG, respectively, CO2 and ND4 ended with a single T, and other PCGS ended with TAA. The ribosomal RNA lengths of 12S and 16S were 950 bp and 1690 bp, respectively. The control area (D-loop) was 1194 bp in size and ranged from 15,685 to 16,878 bp. It showed negative GC skew value (–0.2728) and negative AT skewness (–0.0168). Phylogenetic analysis showed that P. normani was most closely related to Xenotoca eiseni. The complete sequence of the mitochondrial genome will provide a new perspective for classification and help to draw a more complete picture of species diversity within the Cyprinodontiformes.
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spelling pubmed-84257302021-09-09 The complete mitochondrial genome of Poropanchax normani and phylogenetic studies of Cyprinodontidaes Ren, Chuanchen Zhao, Xinyu Meng, Fang Liu, Yifan Wang, Hongqiang Zhang, Kun Liu, Bingjian Yang, Enshang Mitochondrial DNA B Resour Mitogenome Announcement The complete mitochondrial genome of the Cyprinodontiformes fish Poropanchax normani was studied in this study. The size of the entire mitochondrial genome was 16,878 bp, and the total length of the encoding sequence was 11,435 bp, accounting for 67.75%, encoding 3800 amino acids in total. Genome base compositions were: A was 27.30%, C was 28.30%, G was 16.17%, and T was 28.23%. ND2 and CO1 started with GTG, and other protein-coding genes started with ATG. ND1, ND2, and ND3 ended with TAG, respectively, CO2 and ND4 ended with a single T, and other PCGS ended with TAA. The ribosomal RNA lengths of 12S and 16S were 950 bp and 1690 bp, respectively. The control area (D-loop) was 1194 bp in size and ranged from 15,685 to 16,878 bp. It showed negative GC skew value (–0.2728) and negative AT skewness (–0.0168). Phylogenetic analysis showed that P. normani was most closely related to Xenotoca eiseni. The complete sequence of the mitochondrial genome will provide a new perspective for classification and help to draw a more complete picture of species diversity within the Cyprinodontiformes. Taylor & Francis 2021-08-31 /pmc/articles/PMC8425730/ /pubmed/34514130 http://dx.doi.org/10.1080/23802359.2021.1970633 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Ren, Chuanchen
Zhao, Xinyu
Meng, Fang
Liu, Yifan
Wang, Hongqiang
Zhang, Kun
Liu, Bingjian
Yang, Enshang
The complete mitochondrial genome of Poropanchax normani and phylogenetic studies of Cyprinodontidaes
title The complete mitochondrial genome of Poropanchax normani and phylogenetic studies of Cyprinodontidaes
title_full The complete mitochondrial genome of Poropanchax normani and phylogenetic studies of Cyprinodontidaes
title_fullStr The complete mitochondrial genome of Poropanchax normani and phylogenetic studies of Cyprinodontidaes
title_full_unstemmed The complete mitochondrial genome of Poropanchax normani and phylogenetic studies of Cyprinodontidaes
title_short The complete mitochondrial genome of Poropanchax normani and phylogenetic studies of Cyprinodontidaes
title_sort complete mitochondrial genome of poropanchax normani and phylogenetic studies of cyprinodontidaes
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8425730/
https://www.ncbi.nlm.nih.gov/pubmed/34514130
http://dx.doi.org/10.1080/23802359.2021.1970633
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