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The complete chloroplast genome of Callicarpa integerrima var. chinensis (Lamiaceae) from Guilin, China, a potential medicinal plant
Callicarpa integerrima var. chinensis is one of the traditional medical herbs which has the potential for multiple diseases’ treatment. In this study, the complete chloroplast genome sequence of C. integerrima var. chinensis was sequenced and assembled. A typical quadripartite structure was observed...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8425756/ https://www.ncbi.nlm.nih.gov/pubmed/34514157 http://dx.doi.org/10.1080/23802359.2021.1969696 |
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author | Gu, Chunjiao Zhang, Qiang Zhang, Deng Zhang, Yancheng Liang, Junsong |
author_facet | Gu, Chunjiao Zhang, Qiang Zhang, Deng Zhang, Yancheng Liang, Junsong |
author_sort | Gu, Chunjiao |
collection | PubMed |
description | Callicarpa integerrima var. chinensis is one of the traditional medical herbs which has the potential for multiple diseases’ treatment. In this study, the complete chloroplast genome sequence of C. integerrima var. chinensis was sequenced and assembled. A typical quadripartite structure was observed in the chloroplast genome of C. integerrima var. chinensis which was 154179 bp in length, including a pair of inverted repeat (IR) regions (each 51396 bp) separated by a large single-copy region (LSC) of 84927 bp and a small single-copy region (SSC) of 17856 bp, and the overall GC contents of the chloroplast genome was 38.08%. Additionally, we annotated 132 genes, including 86 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. Phylogenetic analysis was adopted which confirmed the position of C. integerrima var. chinensis was close to the congeneric C. formosana and C. siongsaiensis. |
format | Online Article Text |
id | pubmed-8425756 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-84257562021-09-09 The complete chloroplast genome of Callicarpa integerrima var. chinensis (Lamiaceae) from Guilin, China, a potential medicinal plant Gu, Chunjiao Zhang, Qiang Zhang, Deng Zhang, Yancheng Liang, Junsong Mitochondrial DNA B Resour Mitogenome Announcement Callicarpa integerrima var. chinensis is one of the traditional medical herbs which has the potential for multiple diseases’ treatment. In this study, the complete chloroplast genome sequence of C. integerrima var. chinensis was sequenced and assembled. A typical quadripartite structure was observed in the chloroplast genome of C. integerrima var. chinensis which was 154179 bp in length, including a pair of inverted repeat (IR) regions (each 51396 bp) separated by a large single-copy region (LSC) of 84927 bp and a small single-copy region (SSC) of 17856 bp, and the overall GC contents of the chloroplast genome was 38.08%. Additionally, we annotated 132 genes, including 86 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. Phylogenetic analysis was adopted which confirmed the position of C. integerrima var. chinensis was close to the congeneric C. formosana and C. siongsaiensis. Taylor & Francis 2021-08-27 /pmc/articles/PMC8425756/ /pubmed/34514157 http://dx.doi.org/10.1080/23802359.2021.1969696 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Gu, Chunjiao Zhang, Qiang Zhang, Deng Zhang, Yancheng Liang, Junsong The complete chloroplast genome of Callicarpa integerrima var. chinensis (Lamiaceae) from Guilin, China, a potential medicinal plant |
title | The complete chloroplast genome of Callicarpa integerrima var. chinensis (Lamiaceae) from Guilin, China, a potential medicinal plant |
title_full | The complete chloroplast genome of Callicarpa integerrima var. chinensis (Lamiaceae) from Guilin, China, a potential medicinal plant |
title_fullStr | The complete chloroplast genome of Callicarpa integerrima var. chinensis (Lamiaceae) from Guilin, China, a potential medicinal plant |
title_full_unstemmed | The complete chloroplast genome of Callicarpa integerrima var. chinensis (Lamiaceae) from Guilin, China, a potential medicinal plant |
title_short | The complete chloroplast genome of Callicarpa integerrima var. chinensis (Lamiaceae) from Guilin, China, a potential medicinal plant |
title_sort | complete chloroplast genome of callicarpa integerrima var. chinensis (lamiaceae) from guilin, china, a potential medicinal plant |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8425756/ https://www.ncbi.nlm.nih.gov/pubmed/34514157 http://dx.doi.org/10.1080/23802359.2021.1969696 |
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