Complete chloroplast genome sequence and phylogenetic analysis of Ilex × attenuata ‘Fosteri’ (Aquifoliaceae)

Ilex × attenuata ‘Fosteri’ is an important ornamental plant widely distributed in mid-southern China and south-eastern United States. In this study, we assembled the complete chloroplast (cp) genome of I. attenuata by high-throughput sequencing and bioinformatics. The full length of cp genome was 15...

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Autores principales: Chong, Xinran, Zhang, Fan, Li, Yunlong, Wang, Chuanyong, Zhou, Yanwei, Zhou, Ting, Wang, Yinjie, Lu, Xiaoqing, Chen, Hong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8425775/
https://www.ncbi.nlm.nih.gov/pubmed/34514131
http://dx.doi.org/10.1080/23802359.2021.1970637
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author Chong, Xinran
Zhang, Fan
Li, Yunlong
Wang, Chuanyong
Zhou, Yanwei
Zhou, Ting
Wang, Yinjie
Lu, Xiaoqing
Chen, Hong
author_facet Chong, Xinran
Zhang, Fan
Li, Yunlong
Wang, Chuanyong
Zhou, Yanwei
Zhou, Ting
Wang, Yinjie
Lu, Xiaoqing
Chen, Hong
author_sort Chong, Xinran
collection PubMed
description Ilex × attenuata ‘Fosteri’ is an important ornamental plant widely distributed in mid-southern China and south-eastern United States. In this study, we assembled the complete chloroplast (cp) genome of I. attenuata by high-throughput sequencing and bioinformatics. The full length of cp genome was 157,833 bp with 37.63% overall GC content, which contained two inverted repeats (IR) of 26,093 bp separated by a large single-copy (LSC) and a small single copy (SSC) of 87,188 bp and 18,459 bp, respectively. The cp genome contained 135 genes, including 88 protein-coding genes, 8 rRNA genes and 39 tRNA genes. Phylogenetic tree showed that the close relationship of three species of Ilex (I. attenuata, I. viridis and I. szechwanensis) in the Aquifoliaceae family.
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spelling pubmed-84257752021-09-09 Complete chloroplast genome sequence and phylogenetic analysis of Ilex × attenuata ‘Fosteri’ (Aquifoliaceae) Chong, Xinran Zhang, Fan Li, Yunlong Wang, Chuanyong Zhou, Yanwei Zhou, Ting Wang, Yinjie Lu, Xiaoqing Chen, Hong Mitochondrial DNA B Resour Mitogenome Announcement Ilex × attenuata ‘Fosteri’ is an important ornamental plant widely distributed in mid-southern China and south-eastern United States. In this study, we assembled the complete chloroplast (cp) genome of I. attenuata by high-throughput sequencing and bioinformatics. The full length of cp genome was 157,833 bp with 37.63% overall GC content, which contained two inverted repeats (IR) of 26,093 bp separated by a large single-copy (LSC) and a small single copy (SSC) of 87,188 bp and 18,459 bp, respectively. The cp genome contained 135 genes, including 88 protein-coding genes, 8 rRNA genes and 39 tRNA genes. Phylogenetic tree showed that the close relationship of three species of Ilex (I. attenuata, I. viridis and I. szechwanensis) in the Aquifoliaceae family. Taylor & Francis 2021-08-31 /pmc/articles/PMC8425775/ /pubmed/34514131 http://dx.doi.org/10.1080/23802359.2021.1970637 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Chong, Xinran
Zhang, Fan
Li, Yunlong
Wang, Chuanyong
Zhou, Yanwei
Zhou, Ting
Wang, Yinjie
Lu, Xiaoqing
Chen, Hong
Complete chloroplast genome sequence and phylogenetic analysis of Ilex × attenuata ‘Fosteri’ (Aquifoliaceae)
title Complete chloroplast genome sequence and phylogenetic analysis of Ilex × attenuata ‘Fosteri’ (Aquifoliaceae)
title_full Complete chloroplast genome sequence and phylogenetic analysis of Ilex × attenuata ‘Fosteri’ (Aquifoliaceae)
title_fullStr Complete chloroplast genome sequence and phylogenetic analysis of Ilex × attenuata ‘Fosteri’ (Aquifoliaceae)
title_full_unstemmed Complete chloroplast genome sequence and phylogenetic analysis of Ilex × attenuata ‘Fosteri’ (Aquifoliaceae)
title_short Complete chloroplast genome sequence and phylogenetic analysis of Ilex × attenuata ‘Fosteri’ (Aquifoliaceae)
title_sort complete chloroplast genome sequence and phylogenetic analysis of ilex × attenuata ‘fosteri’ (aquifoliaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8425775/
https://www.ncbi.nlm.nih.gov/pubmed/34514131
http://dx.doi.org/10.1080/23802359.2021.1970637
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