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Identification of Immune Cell Infiltration Landscape and Their Prognostic Significance in Uveal Melanoma
Uveal melanoma (UVM) is the most common primary intraocular cancer in adults. Increasing evidence has demonstrated that immune cell infiltration (ICI) is crucial in predicting patient outcomes and therapeutic efficacy. Thus, describing the immune cell infiltrative landscape of UVM tumors may yield a...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8427429/ https://www.ncbi.nlm.nih.gov/pubmed/34513843 http://dx.doi.org/10.3389/fcell.2021.713569 |
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author | Zhao, Han Chen, Yun Shen, Peijun Gong, Lan |
author_facet | Zhao, Han Chen, Yun Shen, Peijun Gong, Lan |
author_sort | Zhao, Han |
collection | PubMed |
description | Uveal melanoma (UVM) is the most common primary intraocular cancer in adults. Increasing evidence has demonstrated that immune cell infiltration (ICI) is crucial in predicting patient outcomes and therapeutic efficacy. Thus, describing the immune cell infiltrative landscape of UVM tumors may yield a novel prognostic marker and provide direction for immunotherapeutic selection. In this study, the gene expression data and clinical information of UVM patients were obtained from the cancer genome atlas (TCGA) and gene expression omnibus (GEO) databases. The ICI landscape of UVM was analyzed using the CIBERSORT and ESTIMATE algorithms. Two ICI phenotypes were defined, and the ICI scores were calculated by using principal component analysis algorithms. We found that a subtype with high ICI scores had poorer prognosis and increased expression levels of immune checkpoint-related genes. This study demonstrates that ICI scores are an independent prognostic biomarker and highlights their value in predicting immunotherapeutic outcomes. |
format | Online Article Text |
id | pubmed-8427429 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-84274292021-09-10 Identification of Immune Cell Infiltration Landscape and Their Prognostic Significance in Uveal Melanoma Zhao, Han Chen, Yun Shen, Peijun Gong, Lan Front Cell Dev Biol Cell and Developmental Biology Uveal melanoma (UVM) is the most common primary intraocular cancer in adults. Increasing evidence has demonstrated that immune cell infiltration (ICI) is crucial in predicting patient outcomes and therapeutic efficacy. Thus, describing the immune cell infiltrative landscape of UVM tumors may yield a novel prognostic marker and provide direction for immunotherapeutic selection. In this study, the gene expression data and clinical information of UVM patients were obtained from the cancer genome atlas (TCGA) and gene expression omnibus (GEO) databases. The ICI landscape of UVM was analyzed using the CIBERSORT and ESTIMATE algorithms. Two ICI phenotypes were defined, and the ICI scores were calculated by using principal component analysis algorithms. We found that a subtype with high ICI scores had poorer prognosis and increased expression levels of immune checkpoint-related genes. This study demonstrates that ICI scores are an independent prognostic biomarker and highlights their value in predicting immunotherapeutic outcomes. Frontiers Media S.A. 2021-08-26 /pmc/articles/PMC8427429/ /pubmed/34513843 http://dx.doi.org/10.3389/fcell.2021.713569 Text en Copyright © 2021 Zhao, Chen, Shen and Gong. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Cell and Developmental Biology Zhao, Han Chen, Yun Shen, Peijun Gong, Lan Identification of Immune Cell Infiltration Landscape and Their Prognostic Significance in Uveal Melanoma |
title | Identification of Immune Cell Infiltration Landscape and Their Prognostic Significance in Uveal Melanoma |
title_full | Identification of Immune Cell Infiltration Landscape and Their Prognostic Significance in Uveal Melanoma |
title_fullStr | Identification of Immune Cell Infiltration Landscape and Their Prognostic Significance in Uveal Melanoma |
title_full_unstemmed | Identification of Immune Cell Infiltration Landscape and Their Prognostic Significance in Uveal Melanoma |
title_short | Identification of Immune Cell Infiltration Landscape and Their Prognostic Significance in Uveal Melanoma |
title_sort | identification of immune cell infiltration landscape and their prognostic significance in uveal melanoma |
topic | Cell and Developmental Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8427429/ https://www.ncbi.nlm.nih.gov/pubmed/34513843 http://dx.doi.org/10.3389/fcell.2021.713569 |
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