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Densely connected attention network for diagnosing COVID-19 based on chest CT

BACKGROUND: To fully enhance the feature extraction capabilities of deep learning models, so as to accurately diagnose coronavirus disease 2019 (COVID-19) based on chest CT images, a densely connected attention network (DenseANet) was constructed by utilizing the self-attention mechanism in deep lea...

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Autores principales: Fu, Yu, Xue, Peng, Dong, Enqing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Ltd. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8427919/
https://www.ncbi.nlm.nih.gov/pubmed/34520988
http://dx.doi.org/10.1016/j.compbiomed.2021.104857
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author Fu, Yu
Xue, Peng
Dong, Enqing
author_facet Fu, Yu
Xue, Peng
Dong, Enqing
author_sort Fu, Yu
collection PubMed
description BACKGROUND: To fully enhance the feature extraction capabilities of deep learning models, so as to accurately diagnose coronavirus disease 2019 (COVID-19) based on chest CT images, a densely connected attention network (DenseANet) was constructed by utilizing the self-attention mechanism in deep learning. METHODS: During the construction of the DenseANet, we not only densely connected attention features within and between the feature extraction blocks with the same scale, but also densely connected attention features with different scales at the end of the deep model, thereby further enhancing the high-order features. In this way, as the depth of the deep model increases, the spatial attention features generated by different layers can be densely connected and gradually transferred to deeper layers. The DenseANet takes CT images of the lung fields segmented by an improved U-Net as inputs and outputs the probability of the patients suffering from COVID-19. RESULTS: Compared with exiting attention networks, DenseANet can maximize the utilization of self-attention features at different depths in the model. A five-fold cross-validation experiment was performed on a dataset containing 2993 CT scans of 2121 patients, and experiments showed that the DenseANet can effectively locate the lung lesions of patients infected with SARS-CoV-2, and distinguish COVID-19, common pneumonia and normal controls with an average of 96.06% Acc and 0.989 AUC. CONCLUSIONS: The DenseANet we proposed can generate strong attention features and achieve the best diagnosis results. In addition, the proposed method of densely connecting attention features can be easily extended to other advanced deep learning methods to improve their performance in related tasks.
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spelling pubmed-84279192021-09-09 Densely connected attention network for diagnosing COVID-19 based on chest CT Fu, Yu Xue, Peng Dong, Enqing Comput Biol Med Article BACKGROUND: To fully enhance the feature extraction capabilities of deep learning models, so as to accurately diagnose coronavirus disease 2019 (COVID-19) based on chest CT images, a densely connected attention network (DenseANet) was constructed by utilizing the self-attention mechanism in deep learning. METHODS: During the construction of the DenseANet, we not only densely connected attention features within and between the feature extraction blocks with the same scale, but also densely connected attention features with different scales at the end of the deep model, thereby further enhancing the high-order features. In this way, as the depth of the deep model increases, the spatial attention features generated by different layers can be densely connected and gradually transferred to deeper layers. The DenseANet takes CT images of the lung fields segmented by an improved U-Net as inputs and outputs the probability of the patients suffering from COVID-19. RESULTS: Compared with exiting attention networks, DenseANet can maximize the utilization of self-attention features at different depths in the model. A five-fold cross-validation experiment was performed on a dataset containing 2993 CT scans of 2121 patients, and experiments showed that the DenseANet can effectively locate the lung lesions of patients infected with SARS-CoV-2, and distinguish COVID-19, common pneumonia and normal controls with an average of 96.06% Acc and 0.989 AUC. CONCLUSIONS: The DenseANet we proposed can generate strong attention features and achieve the best diagnosis results. In addition, the proposed method of densely connecting attention features can be easily extended to other advanced deep learning methods to improve their performance in related tasks. Elsevier Ltd. 2021-10 2021-09-09 /pmc/articles/PMC8427919/ /pubmed/34520988 http://dx.doi.org/10.1016/j.compbiomed.2021.104857 Text en © 2021 Elsevier Ltd. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Fu, Yu
Xue, Peng
Dong, Enqing
Densely connected attention network for diagnosing COVID-19 based on chest CT
title Densely connected attention network for diagnosing COVID-19 based on chest CT
title_full Densely connected attention network for diagnosing COVID-19 based on chest CT
title_fullStr Densely connected attention network for diagnosing COVID-19 based on chest CT
title_full_unstemmed Densely connected attention network for diagnosing COVID-19 based on chest CT
title_short Densely connected attention network for diagnosing COVID-19 based on chest CT
title_sort densely connected attention network for diagnosing covid-19 based on chest ct
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8427919/
https://www.ncbi.nlm.nih.gov/pubmed/34520988
http://dx.doi.org/10.1016/j.compbiomed.2021.104857
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