Viral Host Range database, an online tool for recording, analyzing and disseminating virus–host interactions

MOTIVATION: Viruses are ubiquitous in the living world, and their ability to infect more than one host defines their host range. However, information about which virus infects which host, and about which host is infected by which virus, is not readily available. RESULTS: We developed a web-based too...

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Autores principales: Lamy-Besnier, Quentin, Brancotte, Bryan, Ménager, Hervé, Debarbieux, Laurent
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8428608/
https://www.ncbi.nlm.nih.gov/pubmed/33594411
http://dx.doi.org/10.1093/bioinformatics/btab070
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author Lamy-Besnier, Quentin
Brancotte, Bryan
Ménager, Hervé
Debarbieux, Laurent
author_facet Lamy-Besnier, Quentin
Brancotte, Bryan
Ménager, Hervé
Debarbieux, Laurent
author_sort Lamy-Besnier, Quentin
collection PubMed
description MOTIVATION: Viruses are ubiquitous in the living world, and their ability to infect more than one host defines their host range. However, information about which virus infects which host, and about which host is infected by which virus, is not readily available. RESULTS: We developed a web-based tool called the Viral Host Range database to record, analyze and disseminate experimental host range data for viruses infecting archaea, bacteria and eukaryotes. AVAILABILITY AND IMPLEMENTATION: The ViralHostRangeDB application is available from https://viralhostrangedb.pasteur.cloud. Its source code is freely available from the Gitlab instance of Institut Pasteur (https://gitlab.pasteur.fr/hub/viralhostrangedb).
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spelling pubmed-84286082021-09-10 Viral Host Range database, an online tool for recording, analyzing and disseminating virus–host interactions Lamy-Besnier, Quentin Brancotte, Bryan Ménager, Hervé Debarbieux, Laurent Bioinformatics Applications Notes MOTIVATION: Viruses are ubiquitous in the living world, and their ability to infect more than one host defines their host range. However, information about which virus infects which host, and about which host is infected by which virus, is not readily available. RESULTS: We developed a web-based tool called the Viral Host Range database to record, analyze and disseminate experimental host range data for viruses infecting archaea, bacteria and eukaryotes. AVAILABILITY AND IMPLEMENTATION: The ViralHostRangeDB application is available from https://viralhostrangedb.pasteur.cloud. Its source code is freely available from the Gitlab instance of Institut Pasteur (https://gitlab.pasteur.fr/hub/viralhostrangedb). Oxford University Press 2021-02-17 /pmc/articles/PMC8428608/ /pubmed/33594411 http://dx.doi.org/10.1093/bioinformatics/btab070 Text en © The Author(s) 2021. Published by Oxford University Press. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Applications Notes
Lamy-Besnier, Quentin
Brancotte, Bryan
Ménager, Hervé
Debarbieux, Laurent
Viral Host Range database, an online tool for recording, analyzing and disseminating virus–host interactions
title Viral Host Range database, an online tool for recording, analyzing and disseminating virus–host interactions
title_full Viral Host Range database, an online tool for recording, analyzing and disseminating virus–host interactions
title_fullStr Viral Host Range database, an online tool for recording, analyzing and disseminating virus–host interactions
title_full_unstemmed Viral Host Range database, an online tool for recording, analyzing and disseminating virus–host interactions
title_short Viral Host Range database, an online tool for recording, analyzing and disseminating virus–host interactions
title_sort viral host range database, an online tool for recording, analyzing and disseminating virus–host interactions
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8428608/
https://www.ncbi.nlm.nih.gov/pubmed/33594411
http://dx.doi.org/10.1093/bioinformatics/btab070
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