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Utilizing machine learning to improve clinical trial design for acute respiratory distress syndrome

Heterogeneous patient populations, complex pharmacology and low recruitment rates in the Intensive Care Unit (ICU) have led to the failure of many clinical trials. Recently, machine learning (ML) emerged as a new technology to process and identify big data relationships, enabling a new era in clinic...

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Autores principales: Schwager, E., Jansson, K., Rahman, A., Schiffer, S., Chang, Y., Boverman, G., Gross, B., Xu-Wilson, M., Boehme, P., Truebel, H., Frassica, J. J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8429640/
https://www.ncbi.nlm.nih.gov/pubmed/34504281
http://dx.doi.org/10.1038/s41746-021-00505-5
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author Schwager, E.
Jansson, K.
Rahman, A.
Schiffer, S.
Chang, Y.
Boverman, G.
Gross, B.
Xu-Wilson, M.
Boehme, P.
Truebel, H.
Frassica, J. J.
author_facet Schwager, E.
Jansson, K.
Rahman, A.
Schiffer, S.
Chang, Y.
Boverman, G.
Gross, B.
Xu-Wilson, M.
Boehme, P.
Truebel, H.
Frassica, J. J.
author_sort Schwager, E.
collection PubMed
description Heterogeneous patient populations, complex pharmacology and low recruitment rates in the Intensive Care Unit (ICU) have led to the failure of many clinical trials. Recently, machine learning (ML) emerged as a new technology to process and identify big data relationships, enabling a new era in clinical trial design. In this study, we designed a ML model for predictively stratifying acute respiratory distress syndrome (ARDS) patients, ultimately reducing the required number of patients by increasing statistical power through cohort homogeneity. From the Philips eICU Research Institute (eRI) database, no less than 51,555 ARDS patients were extracted. We defined three subpopulations by outcome: (1) rapid death, (2) spontaneous recovery, and (3) long-stay patients. A retrospective univariate analysis identified highly predictive variables for each outcome. All 220 variables were used to determine the most accurate and generalizable model to predict long-stay patients. Multiclass gradient boosting was identified as the best-performing ML model. Whereas alterations in pH, bicarbonate or lactate proved to be strong predictors for rapid death in the univariate analysis, only the multivariate ML model was able to reliably differentiate the disease course of the long-stay outcome population (AUC of 0.77). We demonstrate the feasibility of prospective patient stratification using ML algorithms in the by far largest ARDS cohort reported to date. Our algorithm can identify patients with sufficiently long ARDS episodes to allow time for patients to respond to therapy, increasing statistical power. Further, early enrollment alerts may increase recruitment rate.
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spelling pubmed-84296402021-09-24 Utilizing machine learning to improve clinical trial design for acute respiratory distress syndrome Schwager, E. Jansson, K. Rahman, A. Schiffer, S. Chang, Y. Boverman, G. Gross, B. Xu-Wilson, M. Boehme, P. Truebel, H. Frassica, J. J. NPJ Digit Med Article Heterogeneous patient populations, complex pharmacology and low recruitment rates in the Intensive Care Unit (ICU) have led to the failure of many clinical trials. Recently, machine learning (ML) emerged as a new technology to process and identify big data relationships, enabling a new era in clinical trial design. In this study, we designed a ML model for predictively stratifying acute respiratory distress syndrome (ARDS) patients, ultimately reducing the required number of patients by increasing statistical power through cohort homogeneity. From the Philips eICU Research Institute (eRI) database, no less than 51,555 ARDS patients were extracted. We defined three subpopulations by outcome: (1) rapid death, (2) spontaneous recovery, and (3) long-stay patients. A retrospective univariate analysis identified highly predictive variables for each outcome. All 220 variables were used to determine the most accurate and generalizable model to predict long-stay patients. Multiclass gradient boosting was identified as the best-performing ML model. Whereas alterations in pH, bicarbonate or lactate proved to be strong predictors for rapid death in the univariate analysis, only the multivariate ML model was able to reliably differentiate the disease course of the long-stay outcome population (AUC of 0.77). We demonstrate the feasibility of prospective patient stratification using ML algorithms in the by far largest ARDS cohort reported to date. Our algorithm can identify patients with sufficiently long ARDS episodes to allow time for patients to respond to therapy, increasing statistical power. Further, early enrollment alerts may increase recruitment rate. Nature Publishing Group UK 2021-09-09 /pmc/articles/PMC8429640/ /pubmed/34504281 http://dx.doi.org/10.1038/s41746-021-00505-5 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Schwager, E.
Jansson, K.
Rahman, A.
Schiffer, S.
Chang, Y.
Boverman, G.
Gross, B.
Xu-Wilson, M.
Boehme, P.
Truebel, H.
Frassica, J. J.
Utilizing machine learning to improve clinical trial design for acute respiratory distress syndrome
title Utilizing machine learning to improve clinical trial design for acute respiratory distress syndrome
title_full Utilizing machine learning to improve clinical trial design for acute respiratory distress syndrome
title_fullStr Utilizing machine learning to improve clinical trial design for acute respiratory distress syndrome
title_full_unstemmed Utilizing machine learning to improve clinical trial design for acute respiratory distress syndrome
title_short Utilizing machine learning to improve clinical trial design for acute respiratory distress syndrome
title_sort utilizing machine learning to improve clinical trial design for acute respiratory distress syndrome
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8429640/
https://www.ncbi.nlm.nih.gov/pubmed/34504281
http://dx.doi.org/10.1038/s41746-021-00505-5
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