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A highly-contiguous genome assembly of the Eurasian spruce bark beetle, Ips typographus, provides insight into a major forest pest

Conifer-feeding bark beetles are important herbivores and decomposers in forest ecosystems. These species complete their life cycle in nutritionally poor substrates and some can kill enormous numbers of trees during population outbreaks. The Eurasian spruce bark beetle (Ips typographus) can destroy...

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Autores principales: Powell, Daniel, Groβe-Wilde, Ewald, Krokene, Paal, Roy, Amit, Chakraborty, Amrita, Löfstedt, Christer, Vogel, Heiko, Andersson, Martin N., Schlyter, Fredrik
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8429705/
https://www.ncbi.nlm.nih.gov/pubmed/34504275
http://dx.doi.org/10.1038/s42003-021-02602-3
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author Powell, Daniel
Groβe-Wilde, Ewald
Krokene, Paal
Roy, Amit
Chakraborty, Amrita
Löfstedt, Christer
Vogel, Heiko
Andersson, Martin N.
Schlyter, Fredrik
author_facet Powell, Daniel
Groβe-Wilde, Ewald
Krokene, Paal
Roy, Amit
Chakraborty, Amrita
Löfstedt, Christer
Vogel, Heiko
Andersson, Martin N.
Schlyter, Fredrik
author_sort Powell, Daniel
collection PubMed
description Conifer-feeding bark beetles are important herbivores and decomposers in forest ecosystems. These species complete their life cycle in nutritionally poor substrates and some can kill enormous numbers of trees during population outbreaks. The Eurasian spruce bark beetle (Ips typographus) can destroy >100 million m(3) of spruce in a single year. We report a 236.8 Mb I. typographus genome assembly using PacBio long-read sequencing. The final phased assembly has a contig N(50) of 6.65 Mb in 272 contigs and is predicted to contain 23,923 protein-coding genes. We reveal expanded gene families associated with plant cell wall degradation, including pectinases, aspartyl proteases, and glycosyl hydrolases. This genome sequence from the genus Ips provides timely resources to address questions about the evolutionary biology of the true weevils (Curculionidae), one of the most species-rich animal families. In forests of today, increasingly stressed by global warming, this draft genome may assist in developing pest control strategies to mitigate outbreaks.
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spelling pubmed-84297052021-09-24 A highly-contiguous genome assembly of the Eurasian spruce bark beetle, Ips typographus, provides insight into a major forest pest Powell, Daniel Groβe-Wilde, Ewald Krokene, Paal Roy, Amit Chakraborty, Amrita Löfstedt, Christer Vogel, Heiko Andersson, Martin N. Schlyter, Fredrik Commun Biol Article Conifer-feeding bark beetles are important herbivores and decomposers in forest ecosystems. These species complete their life cycle in nutritionally poor substrates and some can kill enormous numbers of trees during population outbreaks. The Eurasian spruce bark beetle (Ips typographus) can destroy >100 million m(3) of spruce in a single year. We report a 236.8 Mb I. typographus genome assembly using PacBio long-read sequencing. The final phased assembly has a contig N(50) of 6.65 Mb in 272 contigs and is predicted to contain 23,923 protein-coding genes. We reveal expanded gene families associated with plant cell wall degradation, including pectinases, aspartyl proteases, and glycosyl hydrolases. This genome sequence from the genus Ips provides timely resources to address questions about the evolutionary biology of the true weevils (Curculionidae), one of the most species-rich animal families. In forests of today, increasingly stressed by global warming, this draft genome may assist in developing pest control strategies to mitigate outbreaks. Nature Publishing Group UK 2021-09-09 /pmc/articles/PMC8429705/ /pubmed/34504275 http://dx.doi.org/10.1038/s42003-021-02602-3 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Powell, Daniel
Groβe-Wilde, Ewald
Krokene, Paal
Roy, Amit
Chakraborty, Amrita
Löfstedt, Christer
Vogel, Heiko
Andersson, Martin N.
Schlyter, Fredrik
A highly-contiguous genome assembly of the Eurasian spruce bark beetle, Ips typographus, provides insight into a major forest pest
title A highly-contiguous genome assembly of the Eurasian spruce bark beetle, Ips typographus, provides insight into a major forest pest
title_full A highly-contiguous genome assembly of the Eurasian spruce bark beetle, Ips typographus, provides insight into a major forest pest
title_fullStr A highly-contiguous genome assembly of the Eurasian spruce bark beetle, Ips typographus, provides insight into a major forest pest
title_full_unstemmed A highly-contiguous genome assembly of the Eurasian spruce bark beetle, Ips typographus, provides insight into a major forest pest
title_short A highly-contiguous genome assembly of the Eurasian spruce bark beetle, Ips typographus, provides insight into a major forest pest
title_sort highly-contiguous genome assembly of the eurasian spruce bark beetle, ips typographus, provides insight into a major forest pest
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8429705/
https://www.ncbi.nlm.nih.gov/pubmed/34504275
http://dx.doi.org/10.1038/s42003-021-02602-3
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