Cargando…
YTHDF2 is a Potential Biomarker and Associated with Immune Infiltration in Kidney Renal Clear Cell Carcinoma
Clear cell renal cell carcinoma (ccRCC or KIRC) has a high mortality rate globally. It is necessary to identify biomarkers and investigate the mechanisms those biomarkers are associated with, to improve the prognosis of patients with KIRC. N6-Methyladenosine (m6A) affects the fate of modified RNA mo...
Autores principales: | , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8429956/ https://www.ncbi.nlm.nih.gov/pubmed/34512342 http://dx.doi.org/10.3389/fphar.2021.709548 |
_version_ | 1783750644218200064 |
---|---|
author | Su, Ganglin Liu, Tianshu Han, Xiaohong Sun, Hao Che, Wenan Hu, Kun Xiao, Junwen Li, Yanfeng Liu, Yuchen Li, Wujiao Mei, Hongbing |
author_facet | Su, Ganglin Liu, Tianshu Han, Xiaohong Sun, Hao Che, Wenan Hu, Kun Xiao, Junwen Li, Yanfeng Liu, Yuchen Li, Wujiao Mei, Hongbing |
author_sort | Su, Ganglin |
collection | PubMed |
description | Clear cell renal cell carcinoma (ccRCC or KIRC) has a high mortality rate globally. It is necessary to identify biomarkers and investigate the mechanisms those biomarkers are associated with, to improve the prognosis of patients with KIRC. N6-Methyladenosine (m6A) affects the fate of modified RNA molecules and is involved in tumor progression. Different webservers were used in our research to investigate the mRNA transcription and clinical significance of YTHDF2 in KIRC. Survival analysis revealed that patients with elevated YTHDF2 transcription had a slightly longer OS and DFS than those with low YTHDF2 expression. YTHDF2 expression was shown to be significantly associated with the abundance of immune cells such as B cells, CD8(+) T cells, CD4(+) T cells, macrophages, neutrophils, and dendritic cells. For a series of enrichment studies, we combined information on YTHDF2-binding molecules and expression-linked genes and identified the possible influence of “mRNA surveillance pathway,” “RNA degradation,” and “RNA transport” in the biology or pathogeny of KIRC. In addition, we identified multiple miRNA, kinase, and transcription factor targets of YTHDF2 in KIRC and constructed target networks. Overall, our findings show that YTHDF2 is a possible indicator of immune infiltration in the KIRC. |
format | Online Article Text |
id | pubmed-8429956 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-84299562021-09-11 YTHDF2 is a Potential Biomarker and Associated with Immune Infiltration in Kidney Renal Clear Cell Carcinoma Su, Ganglin Liu, Tianshu Han, Xiaohong Sun, Hao Che, Wenan Hu, Kun Xiao, Junwen Li, Yanfeng Liu, Yuchen Li, Wujiao Mei, Hongbing Front Pharmacol Pharmacology Clear cell renal cell carcinoma (ccRCC or KIRC) has a high mortality rate globally. It is necessary to identify biomarkers and investigate the mechanisms those biomarkers are associated with, to improve the prognosis of patients with KIRC. N6-Methyladenosine (m6A) affects the fate of modified RNA molecules and is involved in tumor progression. Different webservers were used in our research to investigate the mRNA transcription and clinical significance of YTHDF2 in KIRC. Survival analysis revealed that patients with elevated YTHDF2 transcription had a slightly longer OS and DFS than those with low YTHDF2 expression. YTHDF2 expression was shown to be significantly associated with the abundance of immune cells such as B cells, CD8(+) T cells, CD4(+) T cells, macrophages, neutrophils, and dendritic cells. For a series of enrichment studies, we combined information on YTHDF2-binding molecules and expression-linked genes and identified the possible influence of “mRNA surveillance pathway,” “RNA degradation,” and “RNA transport” in the biology or pathogeny of KIRC. In addition, we identified multiple miRNA, kinase, and transcription factor targets of YTHDF2 in KIRC and constructed target networks. Overall, our findings show that YTHDF2 is a possible indicator of immune infiltration in the KIRC. Frontiers Media S.A. 2021-08-27 /pmc/articles/PMC8429956/ /pubmed/34512342 http://dx.doi.org/10.3389/fphar.2021.709548 Text en Copyright © 2021 Su, Liu, Han, Sun, Che, Hu, Xiao, Li, Liu, Li and Mei. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Pharmacology Su, Ganglin Liu, Tianshu Han, Xiaohong Sun, Hao Che, Wenan Hu, Kun Xiao, Junwen Li, Yanfeng Liu, Yuchen Li, Wujiao Mei, Hongbing YTHDF2 is a Potential Biomarker and Associated with Immune Infiltration in Kidney Renal Clear Cell Carcinoma |
title | YTHDF2 is a Potential Biomarker and Associated with Immune Infiltration in Kidney Renal Clear Cell Carcinoma |
title_full | YTHDF2 is a Potential Biomarker and Associated with Immune Infiltration in Kidney Renal Clear Cell Carcinoma |
title_fullStr | YTHDF2 is a Potential Biomarker and Associated with Immune Infiltration in Kidney Renal Clear Cell Carcinoma |
title_full_unstemmed | YTHDF2 is a Potential Biomarker and Associated with Immune Infiltration in Kidney Renal Clear Cell Carcinoma |
title_short | YTHDF2 is a Potential Biomarker and Associated with Immune Infiltration in Kidney Renal Clear Cell Carcinoma |
title_sort | ythdf2 is a potential biomarker and associated with immune infiltration in kidney renal clear cell carcinoma |
topic | Pharmacology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8429956/ https://www.ncbi.nlm.nih.gov/pubmed/34512342 http://dx.doi.org/10.3389/fphar.2021.709548 |
work_keys_str_mv | AT suganglin ythdf2isapotentialbiomarkerandassociatedwithimmuneinfiltrationinkidneyrenalclearcellcarcinoma AT liutianshu ythdf2isapotentialbiomarkerandassociatedwithimmuneinfiltrationinkidneyrenalclearcellcarcinoma AT hanxiaohong ythdf2isapotentialbiomarkerandassociatedwithimmuneinfiltrationinkidneyrenalclearcellcarcinoma AT sunhao ythdf2isapotentialbiomarkerandassociatedwithimmuneinfiltrationinkidneyrenalclearcellcarcinoma AT chewenan ythdf2isapotentialbiomarkerandassociatedwithimmuneinfiltrationinkidneyrenalclearcellcarcinoma AT hukun ythdf2isapotentialbiomarkerandassociatedwithimmuneinfiltrationinkidneyrenalclearcellcarcinoma AT xiaojunwen ythdf2isapotentialbiomarkerandassociatedwithimmuneinfiltrationinkidneyrenalclearcellcarcinoma AT liyanfeng ythdf2isapotentialbiomarkerandassociatedwithimmuneinfiltrationinkidneyrenalclearcellcarcinoma AT liuyuchen ythdf2isapotentialbiomarkerandassociatedwithimmuneinfiltrationinkidneyrenalclearcellcarcinoma AT liwujiao ythdf2isapotentialbiomarkerandassociatedwithimmuneinfiltrationinkidneyrenalclearcellcarcinoma AT meihongbing ythdf2isapotentialbiomarkerandassociatedwithimmuneinfiltrationinkidneyrenalclearcellcarcinoma |