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Hydration of Simple Model Peptides in Aqueous Osmolyte Solutions
The biology and chemistry of proteins and peptides are inextricably linked with water as the solvent. The reason for the high stability of some proteins or uncontrolled aggregation of others may be hidden in the properties of their hydration water. In this study, we investigated the effect of stabil...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8431001/ https://www.ncbi.nlm.nih.gov/pubmed/34502252 http://dx.doi.org/10.3390/ijms22179350 |
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author | Panuszko, Aneta Pieloszczyk, Maciej Kuffel, Anna Jacek, Karol Biernacki, Karol A. Demkowicz, Sebastian Stangret, Janusz Bruździak, Piotr |
author_facet | Panuszko, Aneta Pieloszczyk, Maciej Kuffel, Anna Jacek, Karol Biernacki, Karol A. Demkowicz, Sebastian Stangret, Janusz Bruździak, Piotr |
author_sort | Panuszko, Aneta |
collection | PubMed |
description | The biology and chemistry of proteins and peptides are inextricably linked with water as the solvent. The reason for the high stability of some proteins or uncontrolled aggregation of others may be hidden in the properties of their hydration water. In this study, we investigated the effect of stabilizing osmolyte–TMAO (trimethylamine N-oxide) and destabilizing osmolyte–urea on hydration shells of two short peptides, NAGMA (N-acetyl-glycine-methylamide) and diglycine, by means of FTIR spectroscopy and molecular dynamics simulations. We isolated the spectroscopic share of water molecules that are simultaneously under the influence of peptide and osmolyte and determined the structural and energetic properties of these water molecules. Our experimental and computational results revealed that the changes in the structure of water around peptides, caused by the presence of stabilizing or destabilizing osmolyte, are significantly different for both NAGMA and diglycine. The main factor determining the influence of osmolytes on peptides is the structural-energetic similarity of their hydration spheres. We showed that the chosen peptides can serve as models for various fragments of the protein surface: NAGMA for the protein backbone and diglycine for the protein surface with polar side chains. |
format | Online Article Text |
id | pubmed-8431001 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-84310012021-09-11 Hydration of Simple Model Peptides in Aqueous Osmolyte Solutions Panuszko, Aneta Pieloszczyk, Maciej Kuffel, Anna Jacek, Karol Biernacki, Karol A. Demkowicz, Sebastian Stangret, Janusz Bruździak, Piotr Int J Mol Sci Article The biology and chemistry of proteins and peptides are inextricably linked with water as the solvent. The reason for the high stability of some proteins or uncontrolled aggregation of others may be hidden in the properties of their hydration water. In this study, we investigated the effect of stabilizing osmolyte–TMAO (trimethylamine N-oxide) and destabilizing osmolyte–urea on hydration shells of two short peptides, NAGMA (N-acetyl-glycine-methylamide) and diglycine, by means of FTIR spectroscopy and molecular dynamics simulations. We isolated the spectroscopic share of water molecules that are simultaneously under the influence of peptide and osmolyte and determined the structural and energetic properties of these water molecules. Our experimental and computational results revealed that the changes in the structure of water around peptides, caused by the presence of stabilizing or destabilizing osmolyte, are significantly different for both NAGMA and diglycine. The main factor determining the influence of osmolytes on peptides is the structural-energetic similarity of their hydration spheres. We showed that the chosen peptides can serve as models for various fragments of the protein surface: NAGMA for the protein backbone and diglycine for the protein surface with polar side chains. MDPI 2021-08-28 /pmc/articles/PMC8431001/ /pubmed/34502252 http://dx.doi.org/10.3390/ijms22179350 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Panuszko, Aneta Pieloszczyk, Maciej Kuffel, Anna Jacek, Karol Biernacki, Karol A. Demkowicz, Sebastian Stangret, Janusz Bruździak, Piotr Hydration of Simple Model Peptides in Aqueous Osmolyte Solutions |
title | Hydration of Simple Model Peptides in Aqueous Osmolyte Solutions |
title_full | Hydration of Simple Model Peptides in Aqueous Osmolyte Solutions |
title_fullStr | Hydration of Simple Model Peptides in Aqueous Osmolyte Solutions |
title_full_unstemmed | Hydration of Simple Model Peptides in Aqueous Osmolyte Solutions |
title_short | Hydration of Simple Model Peptides in Aqueous Osmolyte Solutions |
title_sort | hydration of simple model peptides in aqueous osmolyte solutions |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8431001/ https://www.ncbi.nlm.nih.gov/pubmed/34502252 http://dx.doi.org/10.3390/ijms22179350 |
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