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Targeted pandemic containment through identifying local contact network bottlenecks
Decision-making about pandemic mitigation often relies upon simulation modelling. Models of disease transmission through networks of contacts–between individuals or between population centres–are increasingly used for these purposes. Real-world contact networks are rich in structural features that i...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8432902/ https://www.ncbi.nlm.nih.gov/pubmed/34460813 http://dx.doi.org/10.1371/journal.pcbi.1009351 |
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author | Yang, Shenghao Senapati, Priyabrata Wang, Di Bauch, Chris T. Fountoulakis, Kimon |
author_facet | Yang, Shenghao Senapati, Priyabrata Wang, Di Bauch, Chris T. Fountoulakis, Kimon |
author_sort | Yang, Shenghao |
collection | PubMed |
description | Decision-making about pandemic mitigation often relies upon simulation modelling. Models of disease transmission through networks of contacts–between individuals or between population centres–are increasingly used for these purposes. Real-world contact networks are rich in structural features that influence infection transmission, such as tightly-knit local communities that are weakly connected to one another. In this paper, we propose a new flow-based edge-betweenness centrality method for detecting bottleneck edges that connect nodes in contact networks. In particular, we utilize convex optimization formulations based on the idea of diffusion with p-norm network flow. Using simulation models of COVID-19 transmission through real network data at both individual and county levels, we demonstrate that targeting bottleneck edges identified by the proposed method reduces the number of infected cases by up to 10% more than state-of-the-art edge-betweenness methods. Furthermore, the proposed method is orders of magnitude faster than existing methods. |
format | Online Article Text |
id | pubmed-8432902 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-84329022021-09-11 Targeted pandemic containment through identifying local contact network bottlenecks Yang, Shenghao Senapati, Priyabrata Wang, Di Bauch, Chris T. Fountoulakis, Kimon PLoS Comput Biol Research Article Decision-making about pandemic mitigation often relies upon simulation modelling. Models of disease transmission through networks of contacts–between individuals or between population centres–are increasingly used for these purposes. Real-world contact networks are rich in structural features that influence infection transmission, such as tightly-knit local communities that are weakly connected to one another. In this paper, we propose a new flow-based edge-betweenness centrality method for detecting bottleneck edges that connect nodes in contact networks. In particular, we utilize convex optimization formulations based on the idea of diffusion with p-norm network flow. Using simulation models of COVID-19 transmission through real network data at both individual and county levels, we demonstrate that targeting bottleneck edges identified by the proposed method reduces the number of infected cases by up to 10% more than state-of-the-art edge-betweenness methods. Furthermore, the proposed method is orders of magnitude faster than existing methods. Public Library of Science 2021-08-30 /pmc/articles/PMC8432902/ /pubmed/34460813 http://dx.doi.org/10.1371/journal.pcbi.1009351 Text en © 2021 Yang et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Yang, Shenghao Senapati, Priyabrata Wang, Di Bauch, Chris T. Fountoulakis, Kimon Targeted pandemic containment through identifying local contact network bottlenecks |
title | Targeted pandemic containment through identifying local contact network bottlenecks |
title_full | Targeted pandemic containment through identifying local contact network bottlenecks |
title_fullStr | Targeted pandemic containment through identifying local contact network bottlenecks |
title_full_unstemmed | Targeted pandemic containment through identifying local contact network bottlenecks |
title_short | Targeted pandemic containment through identifying local contact network bottlenecks |
title_sort | targeted pandemic containment through identifying local contact network bottlenecks |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8432902/ https://www.ncbi.nlm.nih.gov/pubmed/34460813 http://dx.doi.org/10.1371/journal.pcbi.1009351 |
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