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Targeted pandemic containment through identifying local contact network bottlenecks

Decision-making about pandemic mitigation often relies upon simulation modelling. Models of disease transmission through networks of contacts–between individuals or between population centres–are increasingly used for these purposes. Real-world contact networks are rich in structural features that i...

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Autores principales: Yang, Shenghao, Senapati, Priyabrata, Wang, Di, Bauch, Chris T., Fountoulakis, Kimon
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8432902/
https://www.ncbi.nlm.nih.gov/pubmed/34460813
http://dx.doi.org/10.1371/journal.pcbi.1009351
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author Yang, Shenghao
Senapati, Priyabrata
Wang, Di
Bauch, Chris T.
Fountoulakis, Kimon
author_facet Yang, Shenghao
Senapati, Priyabrata
Wang, Di
Bauch, Chris T.
Fountoulakis, Kimon
author_sort Yang, Shenghao
collection PubMed
description Decision-making about pandemic mitigation often relies upon simulation modelling. Models of disease transmission through networks of contacts–between individuals or between population centres–are increasingly used for these purposes. Real-world contact networks are rich in structural features that influence infection transmission, such as tightly-knit local communities that are weakly connected to one another. In this paper, we propose a new flow-based edge-betweenness centrality method for detecting bottleneck edges that connect nodes in contact networks. In particular, we utilize convex optimization formulations based on the idea of diffusion with p-norm network flow. Using simulation models of COVID-19 transmission through real network data at both individual and county levels, we demonstrate that targeting bottleneck edges identified by the proposed method reduces the number of infected cases by up to 10% more than state-of-the-art edge-betweenness methods. Furthermore, the proposed method is orders of magnitude faster than existing methods.
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spelling pubmed-84329022021-09-11 Targeted pandemic containment through identifying local contact network bottlenecks Yang, Shenghao Senapati, Priyabrata Wang, Di Bauch, Chris T. Fountoulakis, Kimon PLoS Comput Biol Research Article Decision-making about pandemic mitigation often relies upon simulation modelling. Models of disease transmission through networks of contacts–between individuals or between population centres–are increasingly used for these purposes. Real-world contact networks are rich in structural features that influence infection transmission, such as tightly-knit local communities that are weakly connected to one another. In this paper, we propose a new flow-based edge-betweenness centrality method for detecting bottleneck edges that connect nodes in contact networks. In particular, we utilize convex optimization formulations based on the idea of diffusion with p-norm network flow. Using simulation models of COVID-19 transmission through real network data at both individual and county levels, we demonstrate that targeting bottleneck edges identified by the proposed method reduces the number of infected cases by up to 10% more than state-of-the-art edge-betweenness methods. Furthermore, the proposed method is orders of magnitude faster than existing methods. Public Library of Science 2021-08-30 /pmc/articles/PMC8432902/ /pubmed/34460813 http://dx.doi.org/10.1371/journal.pcbi.1009351 Text en © 2021 Yang et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Yang, Shenghao
Senapati, Priyabrata
Wang, Di
Bauch, Chris T.
Fountoulakis, Kimon
Targeted pandemic containment through identifying local contact network bottlenecks
title Targeted pandemic containment through identifying local contact network bottlenecks
title_full Targeted pandemic containment through identifying local contact network bottlenecks
title_fullStr Targeted pandemic containment through identifying local contact network bottlenecks
title_full_unstemmed Targeted pandemic containment through identifying local contact network bottlenecks
title_short Targeted pandemic containment through identifying local contact network bottlenecks
title_sort targeted pandemic containment through identifying local contact network bottlenecks
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8432902/
https://www.ncbi.nlm.nih.gov/pubmed/34460813
http://dx.doi.org/10.1371/journal.pcbi.1009351
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