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Using hierarchical similarity to examine the genetics of Behçet’s disease

OBJECTIVE: Behçet’s disease (BD) is a multisystem inflammatory disease that affects patients along the historic silk road. Thus far, the pathogenesis of the disease has proved elusive due to the complex genetic interactions of the disease. In this paper, we seek to clarify the genetic factors of the...

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Autores principales: Shenoi, Samuel J., Baker, Erich J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8434716/
https://www.ncbi.nlm.nih.gov/pubmed/34507623
http://dx.doi.org/10.1186/s13104-021-05767-6
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author Shenoi, Samuel J.
Baker, Erich J.
author_facet Shenoi, Samuel J.
Baker, Erich J.
author_sort Shenoi, Samuel J.
collection PubMed
description OBJECTIVE: Behçet’s disease (BD) is a multisystem inflammatory disease that affects patients along the historic silk road. Thus far, the pathogenesis of the disease has proved elusive due to the complex genetic interactions of the disease. In this paper, we seek to clarify the genetic factors of the disease while also uncovering other diseases of interest that present with a similar genotype as BD. RESULTS: To do this, we employ a convergent functional genomics approach by leveraging the hierarchical similarity tool available in Geneweaver. Through our analysis, we were able to ascertain 7 BD consensus genes and 16 autoimmune diseases with genetic overlap with BD. The results of our study will inform further research into the pathogenesis of Behçet’s disease. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13104-021-05767-6.
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spelling pubmed-84347162021-09-13 Using hierarchical similarity to examine the genetics of Behçet’s disease Shenoi, Samuel J. Baker, Erich J. BMC Res Notes Research Note OBJECTIVE: Behçet’s disease (BD) is a multisystem inflammatory disease that affects patients along the historic silk road. Thus far, the pathogenesis of the disease has proved elusive due to the complex genetic interactions of the disease. In this paper, we seek to clarify the genetic factors of the disease while also uncovering other diseases of interest that present with a similar genotype as BD. RESULTS: To do this, we employ a convergent functional genomics approach by leveraging the hierarchical similarity tool available in Geneweaver. Through our analysis, we were able to ascertain 7 BD consensus genes and 16 autoimmune diseases with genetic overlap with BD. The results of our study will inform further research into the pathogenesis of Behçet’s disease. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13104-021-05767-6. BioMed Central 2021-09-10 /pmc/articles/PMC8434716/ /pubmed/34507623 http://dx.doi.org/10.1186/s13104-021-05767-6 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research Note
Shenoi, Samuel J.
Baker, Erich J.
Using hierarchical similarity to examine the genetics of Behçet’s disease
title Using hierarchical similarity to examine the genetics of Behçet’s disease
title_full Using hierarchical similarity to examine the genetics of Behçet’s disease
title_fullStr Using hierarchical similarity to examine the genetics of Behçet’s disease
title_full_unstemmed Using hierarchical similarity to examine the genetics of Behçet’s disease
title_short Using hierarchical similarity to examine the genetics of Behçet’s disease
title_sort using hierarchical similarity to examine the genetics of behçet’s disease
topic Research Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8434716/
https://www.ncbi.nlm.nih.gov/pubmed/34507623
http://dx.doi.org/10.1186/s13104-021-05767-6
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