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MODB: a comprehensive mitochondrial genome database for Mollusca
Mollusca is the largest marine phylum, comprising about 23% of all named marine organisms, Mollusca systematics are still in flux, and an increase in human activities has affected Molluscan reproduction and development, strongly impacting diversity and classification. Therefore, it is necessary to e...
Autores principales: | , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8435058/ https://www.ncbi.nlm.nih.gov/pubmed/34510194 http://dx.doi.org/10.1093/database/baab056 |
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author | Qu, Jiangyong Xu, Yanran Cui, Yutong Wu, Sen Wang, Lijun Liu, Xiumei Xing, Zhikai Guo, Xiaoyu Wang, Shanshan Li, Ruoran Sun, Xiaoyue Li, Xiang Wang, Xiyue Liu, Tao Wang, Xumin |
author_facet | Qu, Jiangyong Xu, Yanran Cui, Yutong Wu, Sen Wang, Lijun Liu, Xiumei Xing, Zhikai Guo, Xiaoyu Wang, Shanshan Li, Ruoran Sun, Xiaoyue Li, Xiang Wang, Xiyue Liu, Tao Wang, Xumin |
author_sort | Qu, Jiangyong |
collection | PubMed |
description | Mollusca is the largest marine phylum, comprising about 23% of all named marine organisms, Mollusca systematics are still in flux, and an increase in human activities has affected Molluscan reproduction and development, strongly impacting diversity and classification. Therefore, it is necessary to explore the mitochondrial genome of Mollusca. The Mollusca mitochondrial database (MODB) was established for the Life and Health Big Data Center of Yantai University. This database is dedicated to collecting, sorting and sharing basic information regarding mollusks, especially their mitochondrial genome information. We also integrated a series of analysis and visualization tools, such as BLAST, MUSCLE, GENEWISE and LASTZ. In particular, a phylogenetic tree was implemented in this database to visualize the evolutionary relationships between species. The original version contains 616 species whose mitochondrial genomes have been sequenced. The database provides comprehensive information and analysis platform for researchers interested in understanding the biological characteristics of mollusks. Database URL: http://modb.ytu.edu.cn/ |
format | Online Article Text |
id | pubmed-8435058 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-84350582021-09-13 MODB: a comprehensive mitochondrial genome database for Mollusca Qu, Jiangyong Xu, Yanran Cui, Yutong Wu, Sen Wang, Lijun Liu, Xiumei Xing, Zhikai Guo, Xiaoyu Wang, Shanshan Li, Ruoran Sun, Xiaoyue Li, Xiang Wang, Xiyue Liu, Tao Wang, Xumin Database (Oxford) Original Article Mollusca is the largest marine phylum, comprising about 23% of all named marine organisms, Mollusca systematics are still in flux, and an increase in human activities has affected Molluscan reproduction and development, strongly impacting diversity and classification. Therefore, it is necessary to explore the mitochondrial genome of Mollusca. The Mollusca mitochondrial database (MODB) was established for the Life and Health Big Data Center of Yantai University. This database is dedicated to collecting, sorting and sharing basic information regarding mollusks, especially their mitochondrial genome information. We also integrated a series of analysis and visualization tools, such as BLAST, MUSCLE, GENEWISE and LASTZ. In particular, a phylogenetic tree was implemented in this database to visualize the evolutionary relationships between species. The original version contains 616 species whose mitochondrial genomes have been sequenced. The database provides comprehensive information and analysis platform for researchers interested in understanding the biological characteristics of mollusks. Database URL: http://modb.ytu.edu.cn/ Oxford University Press 2021-09-12 /pmc/articles/PMC8435058/ /pubmed/34510194 http://dx.doi.org/10.1093/database/baab056 Text en © The Author(s) 2021. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Article Qu, Jiangyong Xu, Yanran Cui, Yutong Wu, Sen Wang, Lijun Liu, Xiumei Xing, Zhikai Guo, Xiaoyu Wang, Shanshan Li, Ruoran Sun, Xiaoyue Li, Xiang Wang, Xiyue Liu, Tao Wang, Xumin MODB: a comprehensive mitochondrial genome database for Mollusca |
title | MODB: a comprehensive mitochondrial genome database for Mollusca |
title_full | MODB: a comprehensive mitochondrial genome database for Mollusca |
title_fullStr | MODB: a comprehensive mitochondrial genome database for Mollusca |
title_full_unstemmed | MODB: a comprehensive mitochondrial genome database for Mollusca |
title_short | MODB: a comprehensive mitochondrial genome database for Mollusca |
title_sort | modb: a comprehensive mitochondrial genome database for mollusca |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8435058/ https://www.ncbi.nlm.nih.gov/pubmed/34510194 http://dx.doi.org/10.1093/database/baab056 |
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