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An artificial neural network for automated behavioral state classification in rats
Accurate behavioral state classification is critical for many research applications. Researchers typically rely upon manual identification of behavioral state through visual inspection of electrophysiological signals, but this approach is time intensive and subject to low inter-rater reliability. To...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8435206/ https://www.ncbi.nlm.nih.gov/pubmed/34589305 http://dx.doi.org/10.7717/peerj.12127 |
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author | Ellen, Jacob G. Dash, Michael B. |
author_facet | Ellen, Jacob G. Dash, Michael B. |
author_sort | Ellen, Jacob G. |
collection | PubMed |
description | Accurate behavioral state classification is critical for many research applications. Researchers typically rely upon manual identification of behavioral state through visual inspection of electrophysiological signals, but this approach is time intensive and subject to low inter-rater reliability. To overcome these limitations, a diverse set of algorithmic approaches have been put forth to automate the classification process. Recently, novel machine learning approaches have been detailed that produce rapid and highly accurate classifications. These approaches however, are often computationally expensive, require significant expertise to implement, and/or require proprietary software that limits broader adoption. Here we detail a novel artificial neural network that uses electrophysiological features to automatically classify behavioral state in rats with high accuracy, sensitivity, and specificity. Common parameters of interest to sleep scientists, including state-dependent power spectra and homeostatic non-REM slow wave activity, did not significantly differ when using this automated classifier as compared to manual scoring. Flexible options enable researchers to further increase classification accuracy through manual rescoring of a small subset of time intervals with low model prediction certainty or further decrease researcher time by generalizing trained networks across multiple recording days. The algorithm is fully open-source and coded within a popular, and freely available, software platform to increase access to this research tool and provide additional flexibility for future researchers. In sum, we have developed a readily implementable, efficient, and effective approach for automated behavioral state classification in rats. |
format | Online Article Text |
id | pubmed-8435206 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-84352062021-09-28 An artificial neural network for automated behavioral state classification in rats Ellen, Jacob G. Dash, Michael B. PeerJ Animal Behavior Accurate behavioral state classification is critical for many research applications. Researchers typically rely upon manual identification of behavioral state through visual inspection of electrophysiological signals, but this approach is time intensive and subject to low inter-rater reliability. To overcome these limitations, a diverse set of algorithmic approaches have been put forth to automate the classification process. Recently, novel machine learning approaches have been detailed that produce rapid and highly accurate classifications. These approaches however, are often computationally expensive, require significant expertise to implement, and/or require proprietary software that limits broader adoption. Here we detail a novel artificial neural network that uses electrophysiological features to automatically classify behavioral state in rats with high accuracy, sensitivity, and specificity. Common parameters of interest to sleep scientists, including state-dependent power spectra and homeostatic non-REM slow wave activity, did not significantly differ when using this automated classifier as compared to manual scoring. Flexible options enable researchers to further increase classification accuracy through manual rescoring of a small subset of time intervals with low model prediction certainty or further decrease researcher time by generalizing trained networks across multiple recording days. The algorithm is fully open-source and coded within a popular, and freely available, software platform to increase access to this research tool and provide additional flexibility for future researchers. In sum, we have developed a readily implementable, efficient, and effective approach for automated behavioral state classification in rats. PeerJ Inc. 2021-09-09 /pmc/articles/PMC8435206/ /pubmed/34589305 http://dx.doi.org/10.7717/peerj.12127 Text en © 2021 Ellen and Dash https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Animal Behavior Ellen, Jacob G. Dash, Michael B. An artificial neural network for automated behavioral state classification in rats |
title | An artificial neural network for automated behavioral state classification in rats |
title_full | An artificial neural network for automated behavioral state classification in rats |
title_fullStr | An artificial neural network for automated behavioral state classification in rats |
title_full_unstemmed | An artificial neural network for automated behavioral state classification in rats |
title_short | An artificial neural network for automated behavioral state classification in rats |
title_sort | artificial neural network for automated behavioral state classification in rats |
topic | Animal Behavior |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8435206/ https://www.ncbi.nlm.nih.gov/pubmed/34589305 http://dx.doi.org/10.7717/peerj.12127 |
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