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Bioinformatics analysis of the prognostic value of NEK8 and its effects on immune cell infiltration in glioma

Glioma is the most common malignancy of the nervous system with high rates of recurrence and mortality, even after surgery. The 5‐year survival rate is only about 5%. NEK8 is involved in multiple biological processes in a variety of cancers; however, its role in glioma is still not clear. In the cur...

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Autores principales: Xiao, Meng, Du, Chaoyang, Zhang, Chuanbo, Zhang, Xinzhong, Li, Shaomin, Zhang, Dainan, Jia, Wang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8435421/
https://www.ncbi.nlm.nih.gov/pubmed/34374193
http://dx.doi.org/10.1111/jcmm.16831
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author Xiao, Meng
Du, Chaoyang
Zhang, Chuanbo
Zhang, Xinzhong
Li, Shaomin
Zhang, Dainan
Jia, Wang
author_facet Xiao, Meng
Du, Chaoyang
Zhang, Chuanbo
Zhang, Xinzhong
Li, Shaomin
Zhang, Dainan
Jia, Wang
author_sort Xiao, Meng
collection PubMed
description Glioma is the most common malignancy of the nervous system with high rates of recurrence and mortality, even after surgery. The 5‐year survival rate is only about 5%. NEK8 is involved in multiple biological processes in a variety of cancers; however, its role in glioma is still not clear. In the current study, we evaluated the prognostic value of NEK8, as well as its role in the pathogenesis of glioma. Using a bioinformatics approach and RNA‐seq data from public databases, we found that NEK8 expression is elevated in glioma tissues; we further verified this result by RT‐PCR, Western blotting and immunochemistry using clinical samples. Functional enrichment analyses of genes with correlated expression indicated that elevated NEK8 expression is associated with increased immune cell infiltration in glioma and may affect the tumour microenvironment via the regulation of DNA damage/repair. Survival analyses revealed that high levels of NEK8 are associated with a poorer prognosis; higher WHO grade, IDH status, 1p/19q codeletion, age and NEK8 were identified as an independent prognostic factor. These findings support the crucial role of NEK8 in the progression of glioma via effects on immune cell infiltration and suggest that it is a new prognostic biomarker.
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spelling pubmed-84354212021-09-15 Bioinformatics analysis of the prognostic value of NEK8 and its effects on immune cell infiltration in glioma Xiao, Meng Du, Chaoyang Zhang, Chuanbo Zhang, Xinzhong Li, Shaomin Zhang, Dainan Jia, Wang J Cell Mol Med Original Articles Glioma is the most common malignancy of the nervous system with high rates of recurrence and mortality, even after surgery. The 5‐year survival rate is only about 5%. NEK8 is involved in multiple biological processes in a variety of cancers; however, its role in glioma is still not clear. In the current study, we evaluated the prognostic value of NEK8, as well as its role in the pathogenesis of glioma. Using a bioinformatics approach and RNA‐seq data from public databases, we found that NEK8 expression is elevated in glioma tissues; we further verified this result by RT‐PCR, Western blotting and immunochemistry using clinical samples. Functional enrichment analyses of genes with correlated expression indicated that elevated NEK8 expression is associated with increased immune cell infiltration in glioma and may affect the tumour microenvironment via the regulation of DNA damage/repair. Survival analyses revealed that high levels of NEK8 are associated with a poorer prognosis; higher WHO grade, IDH status, 1p/19q codeletion, age and NEK8 were identified as an independent prognostic factor. These findings support the crucial role of NEK8 in the progression of glioma via effects on immune cell infiltration and suggest that it is a new prognostic biomarker. John Wiley and Sons Inc. 2021-08-10 2021-09 /pmc/articles/PMC8435421/ /pubmed/34374193 http://dx.doi.org/10.1111/jcmm.16831 Text en © 2021 The Authors. Journal of Cellular and Molecular Medicine published by Foundation for Cellular and Molecular Medicine and John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Xiao, Meng
Du, Chaoyang
Zhang, Chuanbo
Zhang, Xinzhong
Li, Shaomin
Zhang, Dainan
Jia, Wang
Bioinformatics analysis of the prognostic value of NEK8 and its effects on immune cell infiltration in glioma
title Bioinformatics analysis of the prognostic value of NEK8 and its effects on immune cell infiltration in glioma
title_full Bioinformatics analysis of the prognostic value of NEK8 and its effects on immune cell infiltration in glioma
title_fullStr Bioinformatics analysis of the prognostic value of NEK8 and its effects on immune cell infiltration in glioma
title_full_unstemmed Bioinformatics analysis of the prognostic value of NEK8 and its effects on immune cell infiltration in glioma
title_short Bioinformatics analysis of the prognostic value of NEK8 and its effects on immune cell infiltration in glioma
title_sort bioinformatics analysis of the prognostic value of nek8 and its effects on immune cell infiltration in glioma
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8435421/
https://www.ncbi.nlm.nih.gov/pubmed/34374193
http://dx.doi.org/10.1111/jcmm.16831
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