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The role of YTH domain containing 2 in epigenetic modification and immune infiltration of pan‐cancer
YTH domain containing 2 (YTHDC2) is the largest N6‐Methyladenosine (m(6)A) binding protein of the YTH protein family and the only member containing ATP‐dependent RNA helicase activity. For further analysing its biological role in epigenetic modification, we comprehensively explored YTHDC2 from gene...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8435423/ https://www.ncbi.nlm.nih.gov/pubmed/34312987 http://dx.doi.org/10.1111/jcmm.16818 |
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author | Zhang, Chiyuan Guo, Cuishan Li, Yan Ouyang, Ling Zhao, Qi Liu, Kuiran |
author_facet | Zhang, Chiyuan Guo, Cuishan Li, Yan Ouyang, Ling Zhao, Qi Liu, Kuiran |
author_sort | Zhang, Chiyuan |
collection | PubMed |
description | YTH domain containing 2 (YTHDC2) is the largest N6‐Methyladenosine (m(6)A) binding protein of the YTH protein family and the only member containing ATP‐dependent RNA helicase activity. For further analysing its biological role in epigenetic modification, we comprehensively explored YTHDC2 from gene expression, genetic alteration, protein‐protein interaction (PPI) network, immune infiltration, diagnostic value and prognostic value in pan‐cancer, using a series of databases and bioinformatic tools. We found that YTHDC2 with Missense mutation could cause a different prognosis in uterine corpus endometrial carcinoma (UCEC), and its different methylation level could lead to a totally various prognosis in adrenocortical carcinoma (ACC), cervical squamous cell carcinoma and endocervical adenocarcinoma (CESC), lung squamous cell carcinoma (LUSC) and UCEC. The main molecular mechanisms of YTHDC2 focused on catalytic activity, helicase activity, snRNA binding, spliceosome and mRNA surveillance. Additionally, YTHDC2 was notably correlated with tumour immune infiltration. Moreover, YTHDC2 had a high diagnostic value for seven cancer types and a prognostic value for brain lower grade glioma (LGG), rectum adenocarcinoma (READ) and skin cutaneous melanoma (SKCM). Collectively, YTHDC2 plays a significant role in epigenetic modification and immune infiltration and maybe a potential biomarker for diagnosis and prognosis in certain cancers. |
format | Online Article Text |
id | pubmed-8435423 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-84354232021-09-15 The role of YTH domain containing 2 in epigenetic modification and immune infiltration of pan‐cancer Zhang, Chiyuan Guo, Cuishan Li, Yan Ouyang, Ling Zhao, Qi Liu, Kuiran J Cell Mol Med Original Articles YTH domain containing 2 (YTHDC2) is the largest N6‐Methyladenosine (m(6)A) binding protein of the YTH protein family and the only member containing ATP‐dependent RNA helicase activity. For further analysing its biological role in epigenetic modification, we comprehensively explored YTHDC2 from gene expression, genetic alteration, protein‐protein interaction (PPI) network, immune infiltration, diagnostic value and prognostic value in pan‐cancer, using a series of databases and bioinformatic tools. We found that YTHDC2 with Missense mutation could cause a different prognosis in uterine corpus endometrial carcinoma (UCEC), and its different methylation level could lead to a totally various prognosis in adrenocortical carcinoma (ACC), cervical squamous cell carcinoma and endocervical adenocarcinoma (CESC), lung squamous cell carcinoma (LUSC) and UCEC. The main molecular mechanisms of YTHDC2 focused on catalytic activity, helicase activity, snRNA binding, spliceosome and mRNA surveillance. Additionally, YTHDC2 was notably correlated with tumour immune infiltration. Moreover, YTHDC2 had a high diagnostic value for seven cancer types and a prognostic value for brain lower grade glioma (LGG), rectum adenocarcinoma (READ) and skin cutaneous melanoma (SKCM). Collectively, YTHDC2 plays a significant role in epigenetic modification and immune infiltration and maybe a potential biomarker for diagnosis and prognosis in certain cancers. John Wiley and Sons Inc. 2021-07-27 2021-09 /pmc/articles/PMC8435423/ /pubmed/34312987 http://dx.doi.org/10.1111/jcmm.16818 Text en © 2021 The Authors. Journal of Cellular and Molecular Medicine published by Foundation for Cellular and Molecular Medicine and John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Articles Zhang, Chiyuan Guo, Cuishan Li, Yan Ouyang, Ling Zhao, Qi Liu, Kuiran The role of YTH domain containing 2 in epigenetic modification and immune infiltration of pan‐cancer |
title | The role of YTH domain containing 2 in epigenetic modification and immune infiltration of pan‐cancer |
title_full | The role of YTH domain containing 2 in epigenetic modification and immune infiltration of pan‐cancer |
title_fullStr | The role of YTH domain containing 2 in epigenetic modification and immune infiltration of pan‐cancer |
title_full_unstemmed | The role of YTH domain containing 2 in epigenetic modification and immune infiltration of pan‐cancer |
title_short | The role of YTH domain containing 2 in epigenetic modification and immune infiltration of pan‐cancer |
title_sort | role of yth domain containing 2 in epigenetic modification and immune infiltration of pan‐cancer |
topic | Original Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8435423/ https://www.ncbi.nlm.nih.gov/pubmed/34312987 http://dx.doi.org/10.1111/jcmm.16818 |
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