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The role of YTH domain containing 2 in epigenetic modification and immune infiltration of pan‐cancer

YTH domain containing 2 (YTHDC2) is the largest N6‐Methyladenosine (m(6)A) binding protein of the YTH protein family and the only member containing ATP‐dependent RNA helicase activity. For further analysing its biological role in epigenetic modification, we comprehensively explored YTHDC2 from gene...

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Autores principales: Zhang, Chiyuan, Guo, Cuishan, Li, Yan, Ouyang, Ling, Zhao, Qi, Liu, Kuiran
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8435423/
https://www.ncbi.nlm.nih.gov/pubmed/34312987
http://dx.doi.org/10.1111/jcmm.16818
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author Zhang, Chiyuan
Guo, Cuishan
Li, Yan
Ouyang, Ling
Zhao, Qi
Liu, Kuiran
author_facet Zhang, Chiyuan
Guo, Cuishan
Li, Yan
Ouyang, Ling
Zhao, Qi
Liu, Kuiran
author_sort Zhang, Chiyuan
collection PubMed
description YTH domain containing 2 (YTHDC2) is the largest N6‐Methyladenosine (m(6)A) binding protein of the YTH protein family and the only member containing ATP‐dependent RNA helicase activity. For further analysing its biological role in epigenetic modification, we comprehensively explored YTHDC2 from gene expression, genetic alteration, protein‐protein interaction (PPI) network, immune infiltration, diagnostic value and prognostic value in pan‐cancer, using a series of databases and bioinformatic tools. We found that YTHDC2 with Missense mutation could cause a different prognosis in uterine corpus endometrial carcinoma (UCEC), and its different methylation level could lead to a totally various prognosis in adrenocortical carcinoma (ACC), cervical squamous cell carcinoma and endocervical adenocarcinoma (CESC), lung squamous cell carcinoma (LUSC) and UCEC. The main molecular mechanisms of YTHDC2 focused on catalytic activity, helicase activity, snRNA binding, spliceosome and mRNA surveillance. Additionally, YTHDC2 was notably correlated with tumour immune infiltration. Moreover, YTHDC2 had a high diagnostic value for seven cancer types and a prognostic value for brain lower grade glioma (LGG), rectum adenocarcinoma (READ) and skin cutaneous melanoma (SKCM). Collectively, YTHDC2 plays a significant role in epigenetic modification and immune infiltration and maybe a potential biomarker for diagnosis and prognosis in certain cancers.
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spelling pubmed-84354232021-09-15 The role of YTH domain containing 2 in epigenetic modification and immune infiltration of pan‐cancer Zhang, Chiyuan Guo, Cuishan Li, Yan Ouyang, Ling Zhao, Qi Liu, Kuiran J Cell Mol Med Original Articles YTH domain containing 2 (YTHDC2) is the largest N6‐Methyladenosine (m(6)A) binding protein of the YTH protein family and the only member containing ATP‐dependent RNA helicase activity. For further analysing its biological role in epigenetic modification, we comprehensively explored YTHDC2 from gene expression, genetic alteration, protein‐protein interaction (PPI) network, immune infiltration, diagnostic value and prognostic value in pan‐cancer, using a series of databases and bioinformatic tools. We found that YTHDC2 with Missense mutation could cause a different prognosis in uterine corpus endometrial carcinoma (UCEC), and its different methylation level could lead to a totally various prognosis in adrenocortical carcinoma (ACC), cervical squamous cell carcinoma and endocervical adenocarcinoma (CESC), lung squamous cell carcinoma (LUSC) and UCEC. The main molecular mechanisms of YTHDC2 focused on catalytic activity, helicase activity, snRNA binding, spliceosome and mRNA surveillance. Additionally, YTHDC2 was notably correlated with tumour immune infiltration. Moreover, YTHDC2 had a high diagnostic value for seven cancer types and a prognostic value for brain lower grade glioma (LGG), rectum adenocarcinoma (READ) and skin cutaneous melanoma (SKCM). Collectively, YTHDC2 plays a significant role in epigenetic modification and immune infiltration and maybe a potential biomarker for diagnosis and prognosis in certain cancers. John Wiley and Sons Inc. 2021-07-27 2021-09 /pmc/articles/PMC8435423/ /pubmed/34312987 http://dx.doi.org/10.1111/jcmm.16818 Text en © 2021 The Authors. Journal of Cellular and Molecular Medicine published by Foundation for Cellular and Molecular Medicine and John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Zhang, Chiyuan
Guo, Cuishan
Li, Yan
Ouyang, Ling
Zhao, Qi
Liu, Kuiran
The role of YTH domain containing 2 in epigenetic modification and immune infiltration of pan‐cancer
title The role of YTH domain containing 2 in epigenetic modification and immune infiltration of pan‐cancer
title_full The role of YTH domain containing 2 in epigenetic modification and immune infiltration of pan‐cancer
title_fullStr The role of YTH domain containing 2 in epigenetic modification and immune infiltration of pan‐cancer
title_full_unstemmed The role of YTH domain containing 2 in epigenetic modification and immune infiltration of pan‐cancer
title_short The role of YTH domain containing 2 in epigenetic modification and immune infiltration of pan‐cancer
title_sort role of yth domain containing 2 in epigenetic modification and immune infiltration of pan‐cancer
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8435423/
https://www.ncbi.nlm.nih.gov/pubmed/34312987
http://dx.doi.org/10.1111/jcmm.16818
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