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Identification of Immune-Related Subtypes and Characterization of Tumor Microenvironment Infiltration in Bladder Cancer

Tumors are closely related to the tumor microenvironment (TME). The complex interaction between tumor cells and the TME plays an indisputable role in tumor development. Tumor cells can affect the TME, promote tumor angiogenesis and induce immune tolerance by releasing cell signaling molecules. Immun...

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Autores principales: Huang, Mengjia, Liu, Lin, Zhu, Junkai, Jin, Tong, Chen, Yi, Xu, Li, Cheng, Wenxuan, Ruan, Xinjia, Su, Liwen, Meng, Jialin, Lu, Xiaofan, Yan, Fangrong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8438153/
https://www.ncbi.nlm.nih.gov/pubmed/34532318
http://dx.doi.org/10.3389/fcell.2021.723817
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author Huang, Mengjia
Liu, Lin
Zhu, Junkai
Jin, Tong
Chen, Yi
Xu, Li
Cheng, Wenxuan
Ruan, Xinjia
Su, Liwen
Meng, Jialin
Lu, Xiaofan
Yan, Fangrong
author_facet Huang, Mengjia
Liu, Lin
Zhu, Junkai
Jin, Tong
Chen, Yi
Xu, Li
Cheng, Wenxuan
Ruan, Xinjia
Su, Liwen
Meng, Jialin
Lu, Xiaofan
Yan, Fangrong
author_sort Huang, Mengjia
collection PubMed
description Tumors are closely related to the tumor microenvironment (TME). The complex interaction between tumor cells and the TME plays an indisputable role in tumor development. Tumor cells can affect the TME, promote tumor angiogenesis and induce immune tolerance by releasing cell signaling molecules. Immune cell infiltration (ICI) in the TME can affect the prognosis of patients with bladder cancer. However, the pattern of ICI of the TME in bladder cancer has not yet been elucidated. Herein, we identified three distinct ICI subtypes based on the TME immune infiltration pattern of 584 bladder cancer patients using the ESTIMATE and CIBERSORT algorithms. Then, we identified three gene clusters based on the differentially expressed genes (DEGs) between the three ICI subtypes. In addition, the ICI score was determined using single sample gene set enrichment analysis (ssGSEA). The results suggested that patients in the high ICI score subgroup had a favorable prognosis and higher expression of checkpoint-related and immune activity-related genes. The high ICI score subgroup was also linked to increased tumor mutation burden (TMB) and neoantigen burden. A cohort treated with anti-PD-L1 immunotherapy confirmed the therapeutic advantage and clinical benefit of patients with higher ICI scores. In the end, our study also shows that the ICI score represents an effective prognostic predictor for evaluating the response to immunotherapy. In conclusion, our study deepened the understanding of the TME, and it provides new ideas for improving patients’ response to immunotherapy and promoting individualized tumor immunotherapy in the future.
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spelling pubmed-84381532021-09-15 Identification of Immune-Related Subtypes and Characterization of Tumor Microenvironment Infiltration in Bladder Cancer Huang, Mengjia Liu, Lin Zhu, Junkai Jin, Tong Chen, Yi Xu, Li Cheng, Wenxuan Ruan, Xinjia Su, Liwen Meng, Jialin Lu, Xiaofan Yan, Fangrong Front Cell Dev Biol Cell and Developmental Biology Tumors are closely related to the tumor microenvironment (TME). The complex interaction between tumor cells and the TME plays an indisputable role in tumor development. Tumor cells can affect the TME, promote tumor angiogenesis and induce immune tolerance by releasing cell signaling molecules. Immune cell infiltration (ICI) in the TME can affect the prognosis of patients with bladder cancer. However, the pattern of ICI of the TME in bladder cancer has not yet been elucidated. Herein, we identified three distinct ICI subtypes based on the TME immune infiltration pattern of 584 bladder cancer patients using the ESTIMATE and CIBERSORT algorithms. Then, we identified three gene clusters based on the differentially expressed genes (DEGs) between the three ICI subtypes. In addition, the ICI score was determined using single sample gene set enrichment analysis (ssGSEA). The results suggested that patients in the high ICI score subgroup had a favorable prognosis and higher expression of checkpoint-related and immune activity-related genes. The high ICI score subgroup was also linked to increased tumor mutation burden (TMB) and neoantigen burden. A cohort treated with anti-PD-L1 immunotherapy confirmed the therapeutic advantage and clinical benefit of patients with higher ICI scores. In the end, our study also shows that the ICI score represents an effective prognostic predictor for evaluating the response to immunotherapy. In conclusion, our study deepened the understanding of the TME, and it provides new ideas for improving patients’ response to immunotherapy and promoting individualized tumor immunotherapy in the future. Frontiers Media S.A. 2021-08-31 /pmc/articles/PMC8438153/ /pubmed/34532318 http://dx.doi.org/10.3389/fcell.2021.723817 Text en Copyright © 2021 Huang, Liu, Zhu, Jin, Chen, Xu, Cheng, Ruan, Su, Meng, Lu and Yan. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Cell and Developmental Biology
Huang, Mengjia
Liu, Lin
Zhu, Junkai
Jin, Tong
Chen, Yi
Xu, Li
Cheng, Wenxuan
Ruan, Xinjia
Su, Liwen
Meng, Jialin
Lu, Xiaofan
Yan, Fangrong
Identification of Immune-Related Subtypes and Characterization of Tumor Microenvironment Infiltration in Bladder Cancer
title Identification of Immune-Related Subtypes and Characterization of Tumor Microenvironment Infiltration in Bladder Cancer
title_full Identification of Immune-Related Subtypes and Characterization of Tumor Microenvironment Infiltration in Bladder Cancer
title_fullStr Identification of Immune-Related Subtypes and Characterization of Tumor Microenvironment Infiltration in Bladder Cancer
title_full_unstemmed Identification of Immune-Related Subtypes and Characterization of Tumor Microenvironment Infiltration in Bladder Cancer
title_short Identification of Immune-Related Subtypes and Characterization of Tumor Microenvironment Infiltration in Bladder Cancer
title_sort identification of immune-related subtypes and characterization of tumor microenvironment infiltration in bladder cancer
topic Cell and Developmental Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8438153/
https://www.ncbi.nlm.nih.gov/pubmed/34532318
http://dx.doi.org/10.3389/fcell.2021.723817
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