Cargando…

Identification of Key Genes Associated With the Process of Hepatitis B Inflammation and Cancer Transformation by Integrated Bioinformatics Analysis

BACKGROUND: Hepatocellular carcinoma (HCC) has become the main cause of cancer death worldwide. More than half of hepatocellular carcinoma developed from hepatitis B virus infection (HBV). The purpose of this study is to find the key genes in the transformation process of liver inflammation and canc...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhang, Jingyuan, Liu, Xinkui, Zhou, Wei, Lu, Shan, Wu, Chao, Wu, Zhishan, Liu, Runping, Li, Xiaojiaoyang, Wu, Jiarui, Liu, Yingying, Guo, Siyu, Jia, Shanshan, Zhang, Xiaomeng, Wang, Miaomiao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8440810/
https://www.ncbi.nlm.nih.gov/pubmed/34539726
http://dx.doi.org/10.3389/fgene.2021.654517
_version_ 1783752742616956928
author Zhang, Jingyuan
Liu, Xinkui
Zhou, Wei
Lu, Shan
Wu, Chao
Wu, Zhishan
Liu, Runping
Li, Xiaojiaoyang
Wu, Jiarui
Liu, Yingying
Guo, Siyu
Jia, Shanshan
Zhang, Xiaomeng
Wang, Miaomiao
author_facet Zhang, Jingyuan
Liu, Xinkui
Zhou, Wei
Lu, Shan
Wu, Chao
Wu, Zhishan
Liu, Runping
Li, Xiaojiaoyang
Wu, Jiarui
Liu, Yingying
Guo, Siyu
Jia, Shanshan
Zhang, Xiaomeng
Wang, Miaomiao
author_sort Zhang, Jingyuan
collection PubMed
description BACKGROUND: Hepatocellular carcinoma (HCC) has become the main cause of cancer death worldwide. More than half of hepatocellular carcinoma developed from hepatitis B virus infection (HBV). The purpose of this study is to find the key genes in the transformation process of liver inflammation and cancer and to inhibit the development of chronic inflammation and the transformation from disease to cancer. METHODS: Two groups of GEO data (including normal/HBV and HBV/HBV-HCC) were selected for differential expression analysis. The differential expression genes of HBV-HCC in TCGA were verified to coincide with the above genes to obtain overlapping genes. Then, functional enrichment analysis, modular analysis, and survival analysis were carried out on the key genes. RESULTS: We identified nine central genes (CDK1, MAD2L1, CCNA2, PTTG1, NEK2) that may be closely related to the transformation of hepatitis B. The survival and prognosis gene markers composed of PTTG1, MAD2L1, RRM2, TPX2, CDK1, NEK2, DEPDC1, and ZWINT were constructed, which performed well in predicting the overall survival rate. CONCLUSION: The findings of this study have certain guiding significance for further research on the transformation of hepatitis B inflammatory cancer, inhibition of chronic inflammation, and molecular targeted therapy of cancer.
format Online
Article
Text
id pubmed-8440810
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-84408102021-09-16 Identification of Key Genes Associated With the Process of Hepatitis B Inflammation and Cancer Transformation by Integrated Bioinformatics Analysis Zhang, Jingyuan Liu, Xinkui Zhou, Wei Lu, Shan Wu, Chao Wu, Zhishan Liu, Runping Li, Xiaojiaoyang Wu, Jiarui Liu, Yingying Guo, Siyu Jia, Shanshan Zhang, Xiaomeng Wang, Miaomiao Front Genet Genetics BACKGROUND: Hepatocellular carcinoma (HCC) has become the main cause of cancer death worldwide. More than half of hepatocellular carcinoma developed from hepatitis B virus infection (HBV). The purpose of this study is to find the key genes in the transformation process of liver inflammation and cancer and to inhibit the development of chronic inflammation and the transformation from disease to cancer. METHODS: Two groups of GEO data (including normal/HBV and HBV/HBV-HCC) were selected for differential expression analysis. The differential expression genes of HBV-HCC in TCGA were verified to coincide with the above genes to obtain overlapping genes. Then, functional enrichment analysis, modular analysis, and survival analysis were carried out on the key genes. RESULTS: We identified nine central genes (CDK1, MAD2L1, CCNA2, PTTG1, NEK2) that may be closely related to the transformation of hepatitis B. The survival and prognosis gene markers composed of PTTG1, MAD2L1, RRM2, TPX2, CDK1, NEK2, DEPDC1, and ZWINT were constructed, which performed well in predicting the overall survival rate. CONCLUSION: The findings of this study have certain guiding significance for further research on the transformation of hepatitis B inflammatory cancer, inhibition of chronic inflammation, and molecular targeted therapy of cancer. Frontiers Media S.A. 2021-09-01 /pmc/articles/PMC8440810/ /pubmed/34539726 http://dx.doi.org/10.3389/fgene.2021.654517 Text en Copyright © 2021 Zhang, Liu, Zhou, Lu, Wu, Wu, Liu, Li, Wu, Liu, Guo, Jia, Zhang and Wang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Zhang, Jingyuan
Liu, Xinkui
Zhou, Wei
Lu, Shan
Wu, Chao
Wu, Zhishan
Liu, Runping
Li, Xiaojiaoyang
Wu, Jiarui
Liu, Yingying
Guo, Siyu
Jia, Shanshan
Zhang, Xiaomeng
Wang, Miaomiao
Identification of Key Genes Associated With the Process of Hepatitis B Inflammation and Cancer Transformation by Integrated Bioinformatics Analysis
title Identification of Key Genes Associated With the Process of Hepatitis B Inflammation and Cancer Transformation by Integrated Bioinformatics Analysis
title_full Identification of Key Genes Associated With the Process of Hepatitis B Inflammation and Cancer Transformation by Integrated Bioinformatics Analysis
title_fullStr Identification of Key Genes Associated With the Process of Hepatitis B Inflammation and Cancer Transformation by Integrated Bioinformatics Analysis
title_full_unstemmed Identification of Key Genes Associated With the Process of Hepatitis B Inflammation and Cancer Transformation by Integrated Bioinformatics Analysis
title_short Identification of Key Genes Associated With the Process of Hepatitis B Inflammation and Cancer Transformation by Integrated Bioinformatics Analysis
title_sort identification of key genes associated with the process of hepatitis b inflammation and cancer transformation by integrated bioinformatics analysis
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8440810/
https://www.ncbi.nlm.nih.gov/pubmed/34539726
http://dx.doi.org/10.3389/fgene.2021.654517
work_keys_str_mv AT zhangjingyuan identificationofkeygenesassociatedwiththeprocessofhepatitisbinflammationandcancertransformationbyintegratedbioinformaticsanalysis
AT liuxinkui identificationofkeygenesassociatedwiththeprocessofhepatitisbinflammationandcancertransformationbyintegratedbioinformaticsanalysis
AT zhouwei identificationofkeygenesassociatedwiththeprocessofhepatitisbinflammationandcancertransformationbyintegratedbioinformaticsanalysis
AT lushan identificationofkeygenesassociatedwiththeprocessofhepatitisbinflammationandcancertransformationbyintegratedbioinformaticsanalysis
AT wuchao identificationofkeygenesassociatedwiththeprocessofhepatitisbinflammationandcancertransformationbyintegratedbioinformaticsanalysis
AT wuzhishan identificationofkeygenesassociatedwiththeprocessofhepatitisbinflammationandcancertransformationbyintegratedbioinformaticsanalysis
AT liurunping identificationofkeygenesassociatedwiththeprocessofhepatitisbinflammationandcancertransformationbyintegratedbioinformaticsanalysis
AT lixiaojiaoyang identificationofkeygenesassociatedwiththeprocessofhepatitisbinflammationandcancertransformationbyintegratedbioinformaticsanalysis
AT wujiarui identificationofkeygenesassociatedwiththeprocessofhepatitisbinflammationandcancertransformationbyintegratedbioinformaticsanalysis
AT liuyingying identificationofkeygenesassociatedwiththeprocessofhepatitisbinflammationandcancertransformationbyintegratedbioinformaticsanalysis
AT guosiyu identificationofkeygenesassociatedwiththeprocessofhepatitisbinflammationandcancertransformationbyintegratedbioinformaticsanalysis
AT jiashanshan identificationofkeygenesassociatedwiththeprocessofhepatitisbinflammationandcancertransformationbyintegratedbioinformaticsanalysis
AT zhangxiaomeng identificationofkeygenesassociatedwiththeprocessofhepatitisbinflammationandcancertransformationbyintegratedbioinformaticsanalysis
AT wangmiaomiao identificationofkeygenesassociatedwiththeprocessofhepatitisbinflammationandcancertransformationbyintegratedbioinformaticsanalysis