Cargando…
A Nomogram Integrating Ferroptosis- and Immune-Related Biomarkers for Prediction of Overall Survival in Lung Adenocarcinoma
Ferroptosis plays a dual role in cancer, which is known to be affected to antitumor immune responses. However, the association between ferroptosis and antitumor immune responses is uncertain in lung adenocarcinoma (LUAD). In this work, 38 ferroptosis-related genes (FRGs) and 429 immune-related genes...
Autores principales: | , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8441018/ https://www.ncbi.nlm.nih.gov/pubmed/34539740 http://dx.doi.org/10.3389/fgene.2021.706814 |
_version_ | 1783752790236987392 |
---|---|
author | Chai, Mengyu Li, Xiuchun Zhang, Yaxin Tang, Yemeng Shu, Pingping Lin, Jing Shi, Keqing Wang, Liangxing Huang, Xiaoying |
author_facet | Chai, Mengyu Li, Xiuchun Zhang, Yaxin Tang, Yemeng Shu, Pingping Lin, Jing Shi, Keqing Wang, Liangxing Huang, Xiaoying |
author_sort | Chai, Mengyu |
collection | PubMed |
description | Ferroptosis plays a dual role in cancer, which is known to be affected to antitumor immune responses. However, the association between ferroptosis and antitumor immune responses is uncertain in lung adenocarcinoma (LUAD). In this work, 38 ferroptosis-related genes (FRGs) and 429 immune-related genes (IRGs) were identified as being differentially expressed between tumor and normal samples. Two risk score formulas consisting of seven FRGs and four IRGs, respectively, were developed by Lasso-penalized Cox regression and verified in the GSE13213 dataset. The CIBERSORT algorithm was used to estimate the relative abundance of immune cells in tumors. The correlation between FRGs and immune cells was evaluated using the TIMER database. The results indicated that the development of ferroptosis was synergistic with that of anti-tumor immunity in LUAD. The concordance index and calibration curves showed that the performance of a nomogram that combines clinical staging and risk scores is superior to that of models using a single prognostic factor. In conclusion, ferroptosis might be synergistic with anti-tumor immunity in LUAD. The combined nomogram could reliably predict the probability of overall survival of LUAD patients. These findings may be useful for future investigation of prognostic value and therapeutic potential related to ferroptosis and tumor immunity in LUAD. |
format | Online Article Text |
id | pubmed-8441018 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-84410182021-09-16 A Nomogram Integrating Ferroptosis- and Immune-Related Biomarkers for Prediction of Overall Survival in Lung Adenocarcinoma Chai, Mengyu Li, Xiuchun Zhang, Yaxin Tang, Yemeng Shu, Pingping Lin, Jing Shi, Keqing Wang, Liangxing Huang, Xiaoying Front Genet Genetics Ferroptosis plays a dual role in cancer, which is known to be affected to antitumor immune responses. However, the association between ferroptosis and antitumor immune responses is uncertain in lung adenocarcinoma (LUAD). In this work, 38 ferroptosis-related genes (FRGs) and 429 immune-related genes (IRGs) were identified as being differentially expressed between tumor and normal samples. Two risk score formulas consisting of seven FRGs and four IRGs, respectively, were developed by Lasso-penalized Cox regression and verified in the GSE13213 dataset. The CIBERSORT algorithm was used to estimate the relative abundance of immune cells in tumors. The correlation between FRGs and immune cells was evaluated using the TIMER database. The results indicated that the development of ferroptosis was synergistic with that of anti-tumor immunity in LUAD. The concordance index and calibration curves showed that the performance of a nomogram that combines clinical staging and risk scores is superior to that of models using a single prognostic factor. In conclusion, ferroptosis might be synergistic with anti-tumor immunity in LUAD. The combined nomogram could reliably predict the probability of overall survival of LUAD patients. These findings may be useful for future investigation of prognostic value and therapeutic potential related to ferroptosis and tumor immunity in LUAD. Frontiers Media S.A. 2021-09-01 /pmc/articles/PMC8441018/ /pubmed/34539740 http://dx.doi.org/10.3389/fgene.2021.706814 Text en Copyright © 2021 Chai, Li, Zhang, Tang, Shu, Lin, Shi, Wang and Huang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Chai, Mengyu Li, Xiuchun Zhang, Yaxin Tang, Yemeng Shu, Pingping Lin, Jing Shi, Keqing Wang, Liangxing Huang, Xiaoying A Nomogram Integrating Ferroptosis- and Immune-Related Biomarkers for Prediction of Overall Survival in Lung Adenocarcinoma |
title | A Nomogram Integrating Ferroptosis- and Immune-Related Biomarkers for Prediction of Overall Survival in Lung Adenocarcinoma |
title_full | A Nomogram Integrating Ferroptosis- and Immune-Related Biomarkers for Prediction of Overall Survival in Lung Adenocarcinoma |
title_fullStr | A Nomogram Integrating Ferroptosis- and Immune-Related Biomarkers for Prediction of Overall Survival in Lung Adenocarcinoma |
title_full_unstemmed | A Nomogram Integrating Ferroptosis- and Immune-Related Biomarkers for Prediction of Overall Survival in Lung Adenocarcinoma |
title_short | A Nomogram Integrating Ferroptosis- and Immune-Related Biomarkers for Prediction of Overall Survival in Lung Adenocarcinoma |
title_sort | nomogram integrating ferroptosis- and immune-related biomarkers for prediction of overall survival in lung adenocarcinoma |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8441018/ https://www.ncbi.nlm.nih.gov/pubmed/34539740 http://dx.doi.org/10.3389/fgene.2021.706814 |
work_keys_str_mv | AT chaimengyu anomogramintegratingferroptosisandimmunerelatedbiomarkersforpredictionofoverallsurvivalinlungadenocarcinoma AT lixiuchun anomogramintegratingferroptosisandimmunerelatedbiomarkersforpredictionofoverallsurvivalinlungadenocarcinoma AT zhangyaxin anomogramintegratingferroptosisandimmunerelatedbiomarkersforpredictionofoverallsurvivalinlungadenocarcinoma AT tangyemeng anomogramintegratingferroptosisandimmunerelatedbiomarkersforpredictionofoverallsurvivalinlungadenocarcinoma AT shupingping anomogramintegratingferroptosisandimmunerelatedbiomarkersforpredictionofoverallsurvivalinlungadenocarcinoma AT linjing anomogramintegratingferroptosisandimmunerelatedbiomarkersforpredictionofoverallsurvivalinlungadenocarcinoma AT shikeqing anomogramintegratingferroptosisandimmunerelatedbiomarkersforpredictionofoverallsurvivalinlungadenocarcinoma AT wangliangxing anomogramintegratingferroptosisandimmunerelatedbiomarkersforpredictionofoverallsurvivalinlungadenocarcinoma AT huangxiaoying anomogramintegratingferroptosisandimmunerelatedbiomarkersforpredictionofoverallsurvivalinlungadenocarcinoma AT chaimengyu nomogramintegratingferroptosisandimmunerelatedbiomarkersforpredictionofoverallsurvivalinlungadenocarcinoma AT lixiuchun nomogramintegratingferroptosisandimmunerelatedbiomarkersforpredictionofoverallsurvivalinlungadenocarcinoma AT zhangyaxin nomogramintegratingferroptosisandimmunerelatedbiomarkersforpredictionofoverallsurvivalinlungadenocarcinoma AT tangyemeng nomogramintegratingferroptosisandimmunerelatedbiomarkersforpredictionofoverallsurvivalinlungadenocarcinoma AT shupingping nomogramintegratingferroptosisandimmunerelatedbiomarkersforpredictionofoverallsurvivalinlungadenocarcinoma AT linjing nomogramintegratingferroptosisandimmunerelatedbiomarkersforpredictionofoverallsurvivalinlungadenocarcinoma AT shikeqing nomogramintegratingferroptosisandimmunerelatedbiomarkersforpredictionofoverallsurvivalinlungadenocarcinoma AT wangliangxing nomogramintegratingferroptosisandimmunerelatedbiomarkersforpredictionofoverallsurvivalinlungadenocarcinoma AT huangxiaoying nomogramintegratingferroptosisandimmunerelatedbiomarkersforpredictionofoverallsurvivalinlungadenocarcinoma |